Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., outer membrane protein, putative (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 68.9 bits (167), Expect = 3e-16
 Identities = 100/440 (22%), Positives = 175/440 (39%), Gaps = 35/440 (7%)

Query: 3   VKSLSLAICSILFMPIAHAAPLSFQEAWDLLQQQNNSLAAQRANVERYAHLKDATQNLNL 62
           +K   L   S+LF  +A +  +S QE   L Q +  +L   + N E  A  K  T+   L
Sbjct: 1   MKKEFLVAVSVLF-GMAASLSVSAQEKLSLKQCREMAL---KYNKEMAAADKQ-TEAARL 55

Query: 63  PSVSVGANFTRLDQDVTLSGKQIVDSAGGI----DPNLIASLSPSLLPLVTHLGAAKSTI 118
            S+S  ANF     + T SG  +  +A G       NL   L   +   +   G A    
Sbjct: 56  LSLSYKANFF---PNFTASGTGLYSTADGSLGIRGGNLPVFLPDPVTGELATSGYAYFPG 112

Query: 119 TERD-----IFTSSIRAIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYEDLAKYY 173
              D     ++T  ++   P++ GG+I AA   +   +E A     +       +  K Y
Sbjct: 113 LNLDYKVGTVYTGGVQVEQPLYMGGKIRAAYKMSLLGKEMAHLNEELTASGVILNTDKAY 172

Query: 174 FSVVLAKEVLATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKAQK 233
             +V AKE+          L +   N     Q G     + L+    L+++++  +KA  
Sbjct: 173 VQLVKAKEMKKVAEKYHVLLNELFRNVKSAHQHGMKPQNDVLKVQVKLNESELALRKADN 232

Query: 234 TLDIAQSALTQILGATETVEPSGMLFINTSLPPMHAFIEQTLNTY-------PGLSLLDA 286
            L +A   L   +G   T      + I+   P     +EQ   T        P   +L+ 
Sbjct: 233 ALRLAGMNLCHYIGRPLTAG----IDISDEFPE----VEQEWKTQVADISARPEYGILNK 284

Query: 287 KEKQASSLIKAEQGKYYPEVYLYGDYSLH---EDDSLASQMKPDWLVGVGVNIPLIENSG 343
           +   A   +K  + +  P V + G Y      E +      K  + V + V++PL     
Sbjct: 285 QIAMAEQQVKLNRSELLPRVGVKGSYDYFHGLEINDETLMKKGSFSVFLNVSVPLFHFGE 344

Query: 344 RSEQVKAANSAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRL 403
           R  +V++A   + Q R  +  A + + + + +     ++A  E      SL  A+EN+++
Sbjct: 345 RMNKVRSAKVKLEQTRLEQENANEKMLLELTQATNNLDEARLECELSERSLEQAEENMKV 404

Query: 404 RQKAFSQGLSTSVDVVDAEL 423
             K +  GL T  D ++A++
Sbjct: 405 SGKQYEVGLETLSDYLEAQV 424