Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., outer membrane efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 62.4 bits (150), Expect = 3e-14
 Identities = 64/301 (21%), Positives = 130/301 (43%), Gaps = 18/301 (5%)

Query: 133 PIFTGGRITAAQDAAAGKEEEAQSQLAMEI---QARYEDLAKYYFSVVLAKEVLATRIAV 189
           P++TGG + A    A  K +E  +QL  E+   Q  Y+  A Y+ +   +K +L      
Sbjct: 105 PLYTGGALNAQHQIA--KADEKLNQLNEELTLDQIHYQSDAVYW-NASASKAMLQAADKY 161

Query: 190 EEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKAQKTLDIAQSALTQILGAT 249
           +  + Q  D        G I+  + L     L +A+++  KA++   +A   L  ++G  
Sbjct: 162 QSIVKQQYDIIQDRFDDGMISRTDLLMISTRLKEAELQYIKARQNYTLALQQLNILMGEA 221

Query: 250 ETVEPSGMLFINTSLPPMHAF-IEQTLNTYPGLSLLDAKEKQASSLIKAEQGKYYPEVYL 308
                  +  I     P+    +E  L      +  +    ++ +  KA   ++ P++ +
Sbjct: 222 PNTPVDSLYNIGMISAPVRILPLEDVLQRRADYASTEVNIMKSQAQRKAALSQFNPQLNM 281

Query: 309 Y--GDYSLHEDDSLASQMKPDWLVGVGVNIPLIENSGRSEQVKAANSAVN----QVRYLK 362
           Y  G ++     +L   +  + +VGV +NIP+     R +  +   + +     Q  Y+ 
Sbjct: 282 YFSGGWAT-ATPNLGYDVSFNPIVGVNLNIPIFRWGARFKTNRQQKAYIGIQKLQQSYMT 340

Query: 363 AQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQKAFSQGLSTSVDVVDAE 422
               ++LS  + K      +   +V     +++LA ENL L   ++++G ++ VDV+ A+
Sbjct: 341 DNINEELSAALTK----LTETESQVKTAKENMSLANENLDLATFSYNEGKASMVDVLSAQ 396

Query: 423 L 423
           L
Sbjct: 397 L 397