Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., outer membrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 67.8 bits (164), Expect = 7e-16
 Identities = 85/438 (19%), Positives = 181/438 (41%), Gaps = 50/438 (11%)

Query: 1   MKVKSLSLAICSILF---MPIAHAAPLSFQEAWDLLQQQNNSLAAQRANVERYAHLKDAT 57
           MK++  SL +C         +A  +PL  ++   +    N+ L A   N+     ++ + 
Sbjct: 1   MKIRIYSLLLCGFALGSLSALAQQSPL-LEKYRTMALDYNHDLKAAEKNIAASMEVEKSA 59

Query: 58  QNLNLPSVSVGANFTRLDQDVTLSGKQIVDSAGGIDPNLIASLSPSLLPLVTHLGAAKST 117
           +    P +S  ANF   +  + L+          +D              V  LG +++ 
Sbjct: 60  RADLKPKLSGTANFQYTENPLELT----------LD--------------VPSLGLSRTV 95

Query: 118 ITERDIFTSSIRAIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYEDLAKYYFSVV 177
             ++  +  S+  + P++TGGR+  +   A  ++  A +Q      A        Y+S V
Sbjct: 96  EGKQLNYGGSLSILQPVYTGGRVLESIRMAQHQQSFAANQAKALNDAVCYQTDIQYWSAV 155

Query: 178 LAKEVLATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKAQKTLDI 237
             +E++         +        +  + G +   + L A+  L++A+ +  +AQ   + 
Sbjct: 156 ARQEIVTVAEDFRNSIAALVKTIKERVEVGLVDPQDLLMAEVKLNEAEYQLLQAQSNFET 215

Query: 238 AQSALTQILGATETVEPSGMLFINTSLPPMHAFIEQTLNT---YPGLSLLDAKEKQASSL 294
            + AL  ++G    V       +++ +P +       L+T    P + +   + + A S 
Sbjct: 216 GRMALNSMIG----VRLEHHTELDSQIPVVVVDDSTWLSTGMARPEIQMAYDRIRMAEST 271

Query: 295 IKAEQGKYYPEVYLYGDYSLHEDD-SLASQMKPDWLVGVGVNIPLIENSGRSEQVKAANS 353
            K    ++ P+ Y+  D S      +    + P++ V   V++P+ E   R  + +A++ 
Sbjct: 272 KKLNDSQFKPQFYVGIDGSYSSPGYNFKKDLDPNYAVYAKVSVPIFEWGKRKSEKRASSF 331

Query: 354 AVNQVRYLKAQAKQDLSVLVEKTYLEA-------EQALEEVTGLNSSLNLAQENLRLRQK 406
            V         A+ +L+ ++++  LE         QA+E V    +SL  A+EN     +
Sbjct: 332 RVGM-------AEDNLNKVMDQVELEIGVARKALSQAMERVRLSENSLAKAEENEAKAIE 384

Query: 407 AFSQGLSTSVDVVDAELY 424
            +++G  + V+V+DA+ Y
Sbjct: 385 RYNEGKVSVVEVIDAQTY 402