Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  191 bits (485), Expect = 5e-53
 Identities = 133/469 (28%), Positives = 236/469 (50%), Gaps = 13/469 (2%)

Query: 1   MKVKSLSLAICSILFMPIAHAA--PLSFQEAWDLLQQQNNSLAAQRANVERYAHLKDATQ 58
           MK   +   + ++ F  I   A  PLSF+E+  LL Q N SL      +E     +D   
Sbjct: 1   MKKNKILFVLWALCFFVIRTNAQTPLSFEESLHLLNQGNQSLKIADKGIEIAKAERDKLN 60

Query: 59  NLNLPSVSVGANFTRLDQDVTLSGKQIVDSAGGIDPNLIASLSPS---LLPLVTHLGAAK 115
               P++     F  + + + +  KQ +        + + S+ P    +  ++  +GA  
Sbjct: 61  AFWYPTLQSTGAFVHMSEKIEV--KQPLSQFTDPAKDFVHSIIPDDQIISAILDKIGANT 118

Query: 116 ST--ITERDIFTSSIRAIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYEDLAKYY 173
               +T R++ T  + A W +F+GG+   A +      + A+   A    ++   LA+ Y
Sbjct: 119 LVFPLTPRNLTTVDLSAEWVLFSGGKRFRATNIGRTMVDLARENRAQTAASQQNLLAESY 178

Query: 174 FSVVLAKEVLATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKAQK 233
           + + LA++V+A R    +GL +H +NALKLE  G I    RL A  ++D+AK   + A+K
Sbjct: 179 YGLRLAQQVVAVREETYKGLQKHYENALKLEAAGMIDKAGRLFAQVNMDEAKRALEAARK 238

Query: 234 TLDIAQSALTQILGATETVE---PSGMLFINTSLPPMHAFIEQTLNTYPGLSLLDAKEKQ 290
              + QSAL  +L   +T E   P+  LF+N SLPP   F     +    L+ L  +E  
Sbjct: 239 EETVVQSALKVLLNKKDTDENIVPTSPLFMNDSLPPKMLFDMSVNSGNYMLNQLQLQEHI 298

Query: 291 ASSLIKAEQGKYYPEVYLYGDYSLHEDDSLASQMKPDWLVGVGVNIPLIENSGRSEQVKA 350
           A   ++  Q  Y P + L+G  +L+    + S + P  +VG+G    L +   R ++++ 
Sbjct: 299 AKQEVRIAQSGYLPNIALFGKQTLYSH-GIQSNLLPRTMVGIGFTWNLFDGLDREKKIRQ 357

Query: 351 ANSAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQKAFSQ 410
           +      +   K +A+ DL+V V+K Y + E+A + V  LN+++ L++E +R+R+K+F++
Sbjct: 358 SKLTQQTLALGKMKARDDLAVGVDKLYTQLEKAQDNVKALNATIELSEELVRIRKKSFTE 417

Query: 411 GLSTSVDVVDAELYLASIRTQQSLASFNYLISLNKLLALSSEMSSFSTY 459
           G++TS +V+DAE  LA+++  +  A + Y ++L  LL+L      F  Y
Sbjct: 418 GMATSTEVIDAETMLANVKVARLAAYYEYDVALMNLLSLCGTPEQFVNY 466