Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., outer membrane efflux protein (RefSeq) from Shewanella sp. ANA-3

 Score =  345 bits (886), Expect = 2e-99
 Identities = 192/447 (42%), Positives = 294/447 (65%), Gaps = 21/447 (4%)

Query: 19  AHAAPLSFQEAWDLLQQQNNSLAAQRANVERYAHLKDATQNLNLPSVSVGANFTRLDQDV 78
           A A P SF EAW  + + ++ L AQ   V R    ++A ++LNLPS+S+  ++T L++ +
Sbjct: 38  ASAQPSSFTEAWQQVLKVSDKLQAQSQEVNRAKGEQEAGESLNLPSLSLNGSYTHLEKPI 97

Query: 79  TLSGKQIVDSAGGIDPNLIASLSPSLLPLVTHLGAAKSTI---------TERDIFTSSIR 129
            L  +         D N +ASL P+ LP    LG A ++I         TE+DIF +S++
Sbjct: 98  ELDLR---------DLNPLASLDPATLPPA--LGGALASIPGSLFVTPFTEQDIFRASLQ 146

Query: 130 AIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYEDLAKYYFSVVLAKEVLATRIAV 189
           A+WPI+TGG+ITAAQ   A    E Q +L +  +  +  L   Y++V + + +++T+  +
Sbjct: 147 AMWPIYTGGQITAAQGIHAAMVAEKQQELQLATRDLFTQLVDRYYAVDVTQSLVSTQTEL 206

Query: 190 EEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKAQKTLDIAQSALTQILGAT 249
              LT+H D+AL LE++GQIA VERL A  +LD AKV    A++  ++A  AL+++L  +
Sbjct: 207 VASLTKHVDHALALEREGQIAKVERLNAQVALDNAKVNLGSARRQHEMAVIALSRMLQQS 266

Query: 250 ETVEPSGMLFINTSLPPMHAFIEQTLNTYPGLSLLDAKEKQASSLIKAEQGKYYPEVYLY 309
           + V  +  LF+    P +    + TL+ +P L LL+AKE QA+ L+  E+GKY+P V+L+
Sbjct: 267 D-VSTNSPLFVLPQAPSLGDLTQVTLSQHPALKLLEAKEAQANGLVSLEKGKYHPTVFLF 325

Query: 310 GDYSLHEDDSLASQMKPDWLVGVGVNIPLIENSGRSEQVKAANSAVNQVRYLKAQAKQDL 369
           G+Y+L+EDDSL S+++PDW+VGVGV +PL+   GRS +V+AA SA+ Q RY KAQ +QDL
Sbjct: 326 GNYTLYEDDSLFSKVEPDWMVGVGVKVPLLSRDGRSGKVEAAKSALLQARYTKAQTRQDL 385

Query: 370 SVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQKAFSQGLSTSVDVVDAELYLASIR 429
           S+L++++Y +  QA EEV  LN+SL LA ENLRLR+ AF+QGLSTS+D VDAEL L++++
Sbjct: 386 SLLLDQSYRQLLQAEEEVKALNTSLELASENLRLREIAFNQGLSTSIDRVDAELKLSAVK 445

Query: 430 TQQSLASFNYLISLNKLLALSSEMSSF 456
           TQQ  AS+ Y+ +  +L+A+S ++  F
Sbjct: 446 TQQLGASYRYVQAYARLMAISGQLDEF 472