Pairwise Alignments

Query, 538 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 984 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 53.9 bits (128), Expect = 3e-11
 Identities = 96/433 (22%), Positives = 170/433 (39%), Gaps = 75/433 (17%)

Query: 159 YLIERLQDRVEPFLFYLIATALLVVGANALVSSYASRRFQRAILGFEPEEI--------- 209
           Y + RL+DR+E  L  L+  ++    A  +V ++    ++    G+  E+I         
Sbjct: 562 YALRRLRDRIEANLSGLMGPSV----AQDIVENFLP--YKNGAEGYITEDIHFIESRLEE 615

Query: 210 -----ARLYVELDV-------TMSTLKEGIISIDDKGILRSINKSACEILGLRREQALNR 257
                  L  ELD        T+  L  G+ S+     +   N++  E+  +   Q +  
Sbjct: 616 YHSRLTGLAAELDALRRYHRQTLQELPMGVCSLAKDQEILMWNRALEELTEIPALQVVGS 675

Query: 258 RLTTIL-PESDLYTVLATGRTDH--DIELYLNKHWIIANRSPIVVEGKVVGAVSSFRLRD 314
           RL+TI  P   L +       +H     L  N H    N     +   +    S   L  
Sbjct: 676 RLSTIAEPWRSLLSDFIEQADEHLHKQRLAHNGHRRCLNLHKAAIAEPLAPGNSGLVLLV 735

Query: 315 EINELTEQLAQTREYAEMLRS-------QTHEHRNKLNTISGLLQM--------GELDAV 359
           E    T+QL     ++E L S         HE  N +  I+ L Q         GE+  +
Sbjct: 736 EDLTETQQLEDRLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLRDEREDDGEIVEI 795

Query: 360 QQLIGQETEHYQVLIEFLRETI-----KDPLIAGMLLGKTERARELGLELMVEDGARLET 414
              I ++T+    +++ L         +  L    L   T+ A  +GL  +  +   ++ 
Sbjct: 796 SAQIIEQTKRVSRIVQSLMSFAHAGERQHQLYPVSLAQVTQDA--IGLLSLNRNRTEVQF 853

Query: 415 L----PIHIKAED---VVTILGNLIDNAFEATLTAIRTLSPVPPERRVIEVSISDFGNEI 467
           +    P H+   D   +  +L NL+ NA +A+           P+  VI +S       +
Sbjct: 854 INLCHPDHVAEGDPQRLAQVLINLLSNARDAS-----------PQGGVIRISSEVAEQTV 902

Query: 468 ILEVDDQGCGLPKELEHWQLTEKGVSSKAVQNRGVGLFLVKQLADRYQGQLDMHSKA--- 524
            L V+D+G G+PK+++         +    +  G+GL LV  + + + GQ+D+ S A   
Sbjct: 903 YLVVEDEGSGIPKDIQDRLFEPFFTTKDPGEGTGLGLALVYSIIEEHYGQIDIDSPADPE 962

Query: 525 --QGTRMTVYLPK 535
             +GTR  + LP+
Sbjct: 963 TQRGTRFRITLPR 975