Pairwise Alignments

Query, 538 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1390 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 63.9 bits (154), Expect = 4e-14
 Identities = 88/368 (23%), Positives = 163/368 (44%), Gaps = 62/368 (16%)

Query: 218  VTMSTLKEGIISIDDKGILRSINKSACEILGLRREQALNRRLTTILPESDLYTVLATGRT 277
            +  ST    II++D  GI+ + N+ A  + G   ++A+ + +  +  E D    +     
Sbjct: 892  LAQSTKGYAIITLDVDGIITTWNRGAQTLFGYDEQEAIGQCIDMLYTEQDRQAGVPETER 951

Query: 278  DHDIE--LYLNKHWIIANR----------SPIV-VEGKVVGAVSSFR-LRDEINELTEQL 323
             H +E     ++ W +             +P+V  EGKV+G     R L +E  + +EQ 
Sbjct: 952  KHALEHGQASDERWHLRRDGSQRFFSGLVNPLVDSEGKVIGLAKIARDLTEERKQSSEQQ 1011

Query: 324  --AQTREYAEMLRSQ-----THEHRNKLNTI---SGLLQMGELDAVQQLIGQETEHYQVL 373
               +T + A + + Q     +HE ++ LN I   + LL           + + T+  Q  
Sbjct: 1012 NELETIQAANLQKDQFFAVLSHELKHPLNLIQLNTDLLARSPAAKTSPSLRKATQAIQNA 1071

Query: 374  IEFLRETIKDPL-IAGMLLGK------TERAREL--GLELMVEDGARLETL--------- 415
            +      I D + ++ +  GK      T R +++  G+E + E  A+ E +         
Sbjct: 1072 VRSQSRIIDDLMDVSRIRTGKLKLHFATLRYQDVLRGIEAVFEPLAQAENVVFEAFKPDE 1131

Query: 416  PIHIKAED--VVTILGNLIDNAFEATLTAIRTLSPVPPERRVIEVSISDFGNEIILEVDD 473
            PI+I+A+   +  I+ NL++NA++ T    R           I + +   G++  L+V D
Sbjct: 1132 PIYIQADPTRLDQIIWNLLNNAWKFTKGGER-----------ICMQLKRDGDQARLDVID 1180

Query: 474  QGCG-----LPKELEHWQLTEKGVSSKAVQNRGVGLFLVKQLADRYQGQLDMHSK--AQG 526
             G G     LPK  + +   E   + +     G+GL LVKQL + + G ++ +S+   +G
Sbjct: 1181 TGQGISADFLPKVFDMFGQAEMHHAQRTKHGLGIGLALVKQLVEAHNGHIEAYSEGIGRG 1240

Query: 527  TRMTVYLP 534
             R +V+LP
Sbjct: 1241 ARFSVWLP 1248