Pairwise Alignments

Query, 538 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 763 a.a., HAMP domain-containing histidine kinase from Rhodopseudomonas palustris CGA009

 Score = 62.0 bits (149), Expect = 8e-14
 Identities = 78/335 (23%), Positives = 156/335 (46%), Gaps = 42/335 (12%)

Query: 216 LDVTMSTLKEGIISIDDKGILRSINKSACEILGLRREQALNRRLTTILPESDLYTVLATG 275
           ++  +S+   GII +D    +  +N+SA +++G    +AL   L+ ++PE D   ++ T 
Sbjct: 393 IEAVLSSASAGIIGVDGSLSIGILNRSAEKLIGHAEAEALGHPLSEVIPELD--EIMGTA 450

Query: 276 RTDHDIELYLNKHWIIANRSPIVVEGKVVG------AVSSFRLRDEINELTEQLAQTREY 329
           R +    L   +  I+ +    ++  +V        + S     D+I EL     +T  +
Sbjct: 451 R-EGSQRLVQGQITIVRDGRERILNVRVTAEQTGHTSDSYIITLDDITELV-SAQRTSAW 508

Query: 330 AEMLRSQTHEHRNKLNTIS----------GLLQMGELDAVQQ----LIGQETEHYQVLIE 375
            ++ R   HE +N L  I           G + + + +  +Q    ++ Q  +  +++ E
Sbjct: 509 GDVARRIAHEIKNPLTPIQLSAERIKRKFGKVIVEDKNIFEQCTDTIVRQVDDIRRMVDE 568

Query: 376 FLR-ETIKDPLIAGMLLGKTERARELGLEL---MVEDGARLETLPIHIKAED--VVTILG 429
           F R   +  P+I G  +G T R     + +    V+  A ++  P+H + +   +   L 
Sbjct: 569 FSRFARMPKPVIEGEDVGDTVRQVVFLMRVGHPDVDIEAEIKDEPLHARFDRRLISQALT 628

Query: 430 NLIDNAFEATLTAIRTLSPVPPE---RRVIEVSISDFGNEIILEVDDQGCGLPKELEHWQ 486
           N+I NA EA       +  VP E   +  IEV  +  G++++++V D G GLPKE    +
Sbjct: 629 NIIKNATEA-------IEAVPEEELGKGKIEVVAAREGDDVVIDVIDNGIGLPKE-SRSR 680

Query: 487 LTEKGVSSKAVQNRGVGLFLVKQLADRYQGQLDMH 521
           L E  V+++  +  G+GL +V ++   + G ++++
Sbjct: 681 LLEPYVTTRE-KGTGLGLAIVGRVLVDHGGGIELN 714