Pairwise Alignments

Query, 538 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score = 55.5 bits (132), Expect = 4e-12
 Identities = 92/393 (23%), Positives = 147/393 (37%), Gaps = 88/393 (22%)

Query: 217 DVTMSTLKEGIISIDDKGILRSINKSACEILGLRREQALNRRLTTILPESDLYTVLATGR 276
           ++ + +  EGI S+D  G +   N +A  +LG   E  L + +  +L       +     
Sbjct: 28  ELILHSASEGIFSLDTNGCITFANPAASRLLGWPVEDMLTQPVAAVLYGDKPNPLAGEAE 87

Query: 277 TDHDIELYLNKHW----IIANRSPIVVEGKVVGAVSSFRLRDEINELTEQLAQTREYAEM 332
             H  +++L +      +  N++ I+ E + VGAV  F    E       L  T    E 
Sbjct: 88  FQHRRQVFLQRDGSPIVVECNQALILEEDQTVGAVLMFNDISERERAERALQDTLTSLEQ 147

Query: 333 LR---SQTHE---HRNKLNTISGLLQMG-------ELDAVQQLIGQETEHYQVLIEFL-- 377
                +QTH+   H  KL  I G L  G        L  +Q  +G    H + L+  +  
Sbjct: 148 TNRRLTQTHDQLLHAEKLAAI-GQLAAGVAHEINTPLGYIQSNLGAMARHLEDLLTLVDA 206

Query: 378 ------------RETIKDPLI---AGMLLGKTERA-----------------------RE 399
                       RE I    +   A  +L +T +                        R+
Sbjct: 207 YESAAAGQQPPGRERIDLDFLRQDAPQVLAETRQGISRVSTVVRHLLEFSSTCASGEWRQ 266

Query: 400 LGLELMVEDGA----------RLETL-----PIHIKAEDVVTILGNLIDNAFEATLTAIR 444
             LE +    A          RLE       P+H   E +   L NLIDNA  A      
Sbjct: 267 ADLEAICRTAAERACQKRHNFRLEQRYDALPPLHCLPERLQQALENLIDNALLA------ 320

Query: 445 TLSPVPPERRVIEVSISDFGNEIILEVDDQGCGL-PKELEHWQLTEKGVSSKAV-QNRGV 502
               +P E  V        G +I L V+D GCG+ P+ LE   +     +++ V    G+
Sbjct: 321 ----IPAEGMVRLHGSCPDGRQICLTVEDNGCGIAPQHLE--SIFNPFFTTRPVGSGEGM 374

Query: 503 GLFLVKQLADRYQGQLDMHSK-AQGTRMTVYLP 534
           GL +   +A  + G +++ S    G+R T++LP
Sbjct: 375 GLSVADTVARLHGGNIEVESSPGLGSRFTLHLP 407