Pairwise Alignments

Query, 538 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 47.4 bits (111), Expect = 1e-09
 Identities = 53/224 (23%), Positives = 95/224 (42%), Gaps = 32/224 (14%)

Query: 320 TEQLAQTREYAEMLRSQTHEHRNKLNTISGLLQMGELDAVQ-----QLIGQETEHYQVLI 374
           TEQ  Q + Y   L    H  +  L  I   + + E  + Q     ++I  + +  Q   
Sbjct: 245 TEQ-TQRKRYRNALADLAHSLKTPLAVIKSQVDLSEASSEQVSNISRIISHQLKRAQTAA 303

Query: 375 EFLRET-IKDPLIAGMLL---GKTERARELGLELMVEDGARLETLPIHIKAEDVVTILGN 430
                  IK   +A  LL    K  R  ++ L   + D A  +         D+  ILGN
Sbjct: 304 AASWHLGIKVDEVANKLLRTLAKIYREPQINLSGEIADLAVFKG-----DEADLTEILGN 358

Query: 431 LIDNAFEATLTAIRTLSPVPPERRVIEVSISDFGNEIILEVDDQGCGLPKELEHWQLTEK 490
           L+DNA +A              +  ++++++    ++ L ++D G G+   L+  Q+ E+
Sbjct: 359 LLDNACKAA-------------KSTVKLTVTGDAYQLQLCIEDDGPGISDALQT-QIFER 404

Query: 491 GVSSKAV-QNRGVGLFLVKQLADRYQGQLDMHSKAQ--GTRMTV 531
           G+ + +  Q  G+GL +V+ L D Y G++ +       G + TV
Sbjct: 405 GIRADSYHQGNGIGLAIVRDLVDSYNGRISVSRSESLGGAKFTV 448