Pairwise Alignments

Query, 258 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 257 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  196 bits (497), Expect = 5e-55
 Identities = 106/254 (41%), Positives = 152/254 (59%), Gaps = 2/254 (0%)

Query: 6   CLTTVLGVVLSFSPSVKVQAQG-LESLTYYTENYPPLNFAKEDGKPAGIAVDLLLEAAAA 64
           C   +L VV  FS + ++ A   L  L+YYTE+YPP N+ +E  +  GIAVDLL  AA  
Sbjct: 4   CRALILAVVAFFSCNGELLALNKLSQLSYYTESYPPYNY-RESHQLKGIAVDLLAAAARR 62

Query: 65  VNVTLNLDQIFVQPWPRSYRSALLKQDGVLFSTTRTTHRENLFNWVGPIADIKVVVLARK 124
           V+   ++  I + PW R Y+     ++ VLFSTTRT +RE LF+WVGPI+  ++V+ AR 
Sbjct: 63  VDGRFDIHSIQLVPWARGYKLTRTGKNTVLFSTTRTPYREPLFDWVGPISATRIVIFARA 122

Query: 125 SSQIKVNDPIELGNYRIGVIRDDIGEQQLLQLGVPRESMVEGSTVSSLAEQLLKKRIDLL 184
              I + D  +L  Y IGVI  DIGEQ LL  G+ RE +      +SL   L ++R+DL 
Sbjct: 123 DRVIHITDVEQLNQYSIGVIAQDIGEQALLAAGIAREQLRRAHEATSLVHMLRRERVDLW 182

Query: 185 AYDERTALWWMSQDSYPVEEFETVYVLMQGSLYYAFNKNIDKSVLNDLQKGIELIKNSVN 244
           AY+E    + M Q+    +EFE V+ L    LYYAF+++ D  +   LQ+GI+ +K ++ 
Sbjct: 183 AYEEVVGRYLMKQEGVDTDEFEVVFTLKVSELYYAFSRDSDPELRRRLQQGIDKVKATIE 242

Query: 245 ENGVTRYQAILDKY 258
            NG T+Y+ IL KY
Sbjct: 243 ANGKTQYENILAKY 256