Pairwise Alignments

Query, 258 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 937 a.a., extracellular solute-binding proteins, family 3/GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 44.3 bits (103), Expect = 9e-09
 Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 7   LTTVLGVVLSFSPSVKVQAQGLESLTYYTENYPPLNFAKEDGKPAGIAVDLLLEAAAAVN 66
           L  +L  VLS S     Q Q    +    E+  P  F   DG+  G+ VDL  E     +
Sbjct: 7   LIVILCCVLSNSTVNASQGQTESLIVVMGEDSFPYQFVDNDGEATGLLVDLWKEWGKRTH 66

Query: 67  VTLNLDQIFV-QPWPRSYRSALLKQDGVLFSTTRTTHRENLFNWVGPIADIKVVVLARKS 125
             L    +FV + W  S       +  V     +T  RE  F++   IA++   +   KS
Sbjct: 67  TPL----VFVARHWNESLAQLQQGKAQVHIGMGKTPEREQRFDFADAIANVSTYLYLHKS 122

Query: 126 SQIKVNDPIELGNYRIGVIRDDIGEQQLLQL 156
            Q K N   EL  Y++G++     E +L +L
Sbjct: 123 LQGKKNIK-ELIPYQVGIVSGSSHEAELRRL 152