Pairwise Alignments

Query, 258 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  100 bits (249), Expect = 3e-26
 Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 13  VVLSFSPSVKVQAQGLESLTYYTENYPPLNFAKEDGKPAGIAVDLLLEAAAAVNVTLNLD 72
           V++ F  S+ + AQ   +L  YTE + P++F+  DGKP G+AV ++ E    ++   N D
Sbjct: 8   VIVVFLSSIPLTAQA--TLNIYTEEWAPISFSV-DGKPDGLAVQVVQEIQKRID---NQD 61

Query: 73  QIFVQPWPRSYRSALLKQDGVLFSTTRTTHRENLFNWVGPIADIKVVVLARKSSQIKVND 132
            I V PW R ++    + + VLF+ TRT  RE +F+ +GP+A       A K+S +K+N 
Sbjct: 62  PIKVVPWARGWKIITEQPNTVLFTMTRTAERERMFSLIGPVAVGTTNFYALKNSNLKINS 121

Query: 133 PIELGNYR-IGVIRDDIGEQQLLQLGVPRESMVEGSTVSSLAEQLLKKRIDLLAYDERTA 191
             +    + IGV R  + EQ L++      ++   ST    A+QL+K+RIDL      TA
Sbjct: 122 IEDAKQAKAIGVYRSSVEEQLLIEHRF--SNIAPSSTPLLSAKQLIKQRIDLWCNANLTA 179

Query: 192 LWWMSQDSYPVEEFETVYVLMQGSLYYAFNKNIDKSVLNDLQKGIELIK 240
              +++    +++ +++Y +    LY AF++      ++  ++ +  IK
Sbjct: 180 PSILAEAGASMDDVKSLYTISANHLYIAFSQGTPSEEVDKWKQALISIK 228