Pairwise Alignments

Query, 353 a.a., sensor domain-containing diguanylate cyclase from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 94.0 bits (232), Expect = 1e-23
 Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 11/187 (5%)

Query: 163 VYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHFERFS--DQTSLCLLVIDLDFFK 220
           ++E N++  E S +     D LTG  NR +         R S   +T + LL++D+D FK
Sbjct: 443 LHEVNQKLTEQSTI-----DSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFK 497

Query: 221 SINDQFGHDTGDKVLIETTRLFTQVV--GDNNLYRIGGEEFCVTLFDQSLEQAGRVCEHL 278
           SINDQFGH  GD+ L    +   Q +    + + R GGEEF + L + + + A +V E +
Sbjct: 498 SINDQFGHLAGDQALKLIAQTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAESI 557

Query: 279 RAIVSQHLFAFREKRVQVTISIGVCE--YQAGDQLNDLLKFADMELYRAKKAGRNQVRLF 336
           R  VS     +  K + +T+SIGV            +LL+ AD  LY+AK +GRNQV+L+
Sbjct: 558 RDTVSCIGLTWEGKPIPLTVSIGVSADVIMNEQHSTELLEQADKALYQAKNSGRNQVKLY 617

Query: 337 RHGSTNP 343
               T P
Sbjct: 618 APAQTEP 624