Pairwise Alignments

Query, 274 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., ABC transporter (RefSeq) from Shewanella loihica PV-4

 Score = 73.2 bits (178), Expect = 6e-18
 Identities = 62/238 (26%), Positives = 99/238 (41%), Gaps = 23/238 (9%)

Query: 28  LKRYVRCCLLIIGLCPALLYAQSSPNAEDKLVRIASGEWPPFIGSDLPNYGFVGEIITQA 87
           L+R    C+ I      LL   S+P AE   ++++S  WPP+ G  L + G    +   A
Sbjct: 38  LRRVHLLCVFIF--IATLLCVVSAPKAET--LKLSSLNWPPYSGPTLKDGGACVVVARAA 93

Query: 88  FTKQGYQVEFQFLPWARAYAETQR---GLYDATAIWMHSAEREIDFFYSLPVSQEEFVFF 144
               G++++  + PW+R      R   G       + H  ++   F +S  + Q      
Sbjct: 94  LAAMGHELQVDYFPWSRTVRVVTRDDSGYQGYFPEYHHPTDK---FIFSDSMGQSPLGIL 150

Query: 145 YPVKKPFDWKTLSDLAPYKLGGVLAYSYGKELDALLDSGVLTMERDGLAAKNLEKLAKGR 204
              + P  W  + DL  Y LG V  Y   + LD ++  G   +E       N+ K+A GR
Sbjct: 151 EQSQHPITWSRVQDLNAYTLGVVRDYVNTQALDEMIAIGAQPVELVSSDEHNIRKVATGR 210

Query: 205 VDLVPEEKHIGYYLINQQIPHLQDLITHHPTPFLTNSNYLLFPKQSARSQELLGVFNH 262
           V     + ++  +LI Q  PHL +L T            L F KQ   S++L   F +
Sbjct: 211 VQGAVMDLYVYQFLIEQ--PHLSELKTR-----------LQFNKQLLESKQLYIAFRN 255