Pairwise Alignments

Query, 274 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 49.7 bits (117), Expect = 7e-11
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 20/185 (10%)

Query: 31  YVRCCLLIIGLC---PALLYAQSSPNAEDKLVRIASGEWPP--FIGSDLPNYGFVGEIIT 85
           Y  C  L++ +      L++A ++P      VR+ +  WPP  F    +P  GF  E++ 
Sbjct: 6   YKHCYRLLLCMSLGYSGLVFAVTAP------VRLVTEAWPPMSFEQDGVPT-GFGVELVN 58

Query: 86  QAFTKQGYQVEFQFLPWARAY---AETQRGLYDATAIWMHSAEREIDFFYSLPVSQEEFV 142
                 G Q   + LPWARAY   + T   L  AT+I   S ERE  F +  P++  +  
Sbjct: 59  MLQVSLGQQQSIEVLPWARAYSIASTTPNVLLFATSI---SDERETHFDFIGPIATSKIT 115

Query: 143 FFYPVKKPFDWKTLSDLAPYKLGGVLAYSYGKELDALLDSGVLTMERDGLAAKNLEKLAK 202
            +       +   LSD+    + GV   S G +L  L   GV  +       ++ ++L  
Sbjct: 116 LYAKADDSININQLSDVNAAGIVGVYRESVGAQL--LQQQGVNALLVASFPQQSAKQLLF 173

Query: 203 GRVDL 207
            RV L
Sbjct: 174 SRVRL 178