Pairwise Alignments

Query, 274 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., hypothetical ABC transporter protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 72.4 bits (176), Expect = 8e-18
 Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 2/177 (1%)

Query: 53  NAEDKLVRIASGEWPPFIGSDLPNYGFVGEIITQAFTKQGYQVEFQFLPWARAYAETQRG 112
           +A+   V++ S  WPP+ G  L   G    +   AF +   Q+   F PW+RA       
Sbjct: 18  SAQADTVKLTSLLWPPYAGYQLVQEGASVAVARAAFARMDQQLIVDFYPWSRAIKLASMS 77

Query: 113 LYDATAIWMHSAEREIDFFYSLPVSQEEFVFFYPVKKPFDWKTLSDLAPYKLGGVLAYSY 172
             D    +         F +S P+             P  W  L+DL  Y LG V  Y  
Sbjct: 78  SSDYIGYFPEYYFETDKFIFSKPIGIGPLGIVEQKSHPISWLHLTDLNRYTLGVVKDYVN 137

Query: 173 GKELDALLDSGVLTMERDGLAAKNLEKLAKGRVDLVPEEKHIGYYLINQQIPHLQDL 229
              LD ++ SG   +E      +N+ K+A GR+D    + ++ +YL+ Q  PHLQ L
Sbjct: 138 TDSLDLMIVSGNQPVEMATSDEQNIRKVAAGRIDGAVIDINVLHYLLKQ--PHLQPL 192