Pairwise Alignments

Query, 477 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., drug resistance transporter, EmrB/QacA subfamily from Pseudomonas stutzeri RCH2

 Score =  170 bits (431), Expect = 8e-47
 Identities = 133/466 (28%), Positives = 216/466 (46%), Gaps = 23/466 (4%)

Query: 1   MSQPV--DRKTFLGIFFTVFLPMFLAAVDQTLLATATPAIVRDLGNLQLS-SWIAIGYML 57
           M  PV  D +T   + + V +  F+  +D T+L TA PA+ RDL    L    + I YML
Sbjct: 1   MQSPVSLDARTARVLPWLVAIAFFMQTLDGTILNTALPAMARDLAENPLRMQGVVIAYML 60

Query: 58  ASAASVPVYGWLGDQYGRKPMLMIALSIFALGSVICAFAMNMPWLVAGRIVQGLGSGGLM 117
             A  +P  GW+ D++G + + + A+ +F++GS++CA + +   LVA R++QGLG   ++
Sbjct: 61  TVALLIPASGWIADRFGSRRIFVTAIVLFSVGSLLCALSTSFNQLVASRVLQGLGGALML 120

Query: 118 SLSQALIGELVPPRERARFQGYFSSLFAVASIGGPVLGGVLVTYLSWQWLFWFNLPLVGI 177
            + + ++    P  E  R   + +    V  + GP LGG LV Y SW W+F  NLP VG+
Sbjct: 121 PVGRLVVLRAFPRSEFVRIMAFIALPGLVGPLLGPTLGGWLVEYASWHWIFLINLP-VGV 179

Query: 178 ALYRLARFQFVQSSRKSE-ASIDVAGLILFPSMMTLIIYWLSAGGH-YFPWFSVTSISLV 235
            +  +A  +F+   +  E    D  G +LF + M L+   L   GH +     V  + +V
Sbjct: 180 -IGCIAALRFMPDLKGPERVRFDTLGFVLFGAAMVLVTIALEGLGHMHMSHARVMLLLVV 238

Query: 236 SAFVLTSLLFIAQQKRVTASFLPLRLLARREIHIPLLSTFIFAACLFALIFFLPIFLQLG 295
            A  +T+  +  +  R+ A     +L   R   + +           AL F LP+ LQ+ 
Sbjct: 239 GAACMTA--YWLRAGRIDAPLFSPKLFRTRSFAVGIFGNLFARLGGGALPFLLPLLLQVA 296

Query: 296 LRVNAAQSGLLLIPLSCGIIGGAYTTGKVIAKTGVPKFLPVFGMSLSSCAFAVLAMFSLS 355
           L  + AQ+G+ +IPL+ G +        +I + G  + L +    L     A LA     
Sbjct: 297 LGYSPAQAGMSMIPLALGAMAVKSMAKPIIDRLGYRRLL-IGNTLLLGGLIASLATIDTQ 355

Query: 356 APVVSAIAALCGLGLGTVMPSTQVLVQTLAG--KANLGRITAMASLSRSLGASVGTAFFG 413
            P    +  L  +G+   M  T +   TL G   A+     ++ S+   L  S+G A  G
Sbjct: 356 TPTWLLLVHLGLIGMVNSMQFTAMNTVTLVGLSHADASSGNSLLSVVVQLSMSLGVATAG 415

Query: 414 TLIYSLLPGLSPNSGLQAIAALPQSEILHAFQIGFAVAALLALLGA 459
            L+           G   +     SE+LHAFQ+ F     +A+L A
Sbjct: 416 ALL-----------GGFTVDDAQGSEVLHAFQLTFLCVGGMAMLAA 450