Pairwise Alignments

Query, 477 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., EmrB/QacA family drug resistance transporter (RefSeq) from Shewanella sp. ANA-3

 Score =  144 bits (363), Expect = 7e-39
 Identities = 116/403 (28%), Positives = 190/403 (47%), Gaps = 13/403 (3%)

Query: 13  IFFTVFLPMFLAAVDQTLLATATPAIVRDLGNLQLS-SWIAIGYMLASAASVPVYGWLGD 71
           I  +V L   + A+D T+   A P +   +G  Q   SW+   Y++A+A  +P+ G+L  
Sbjct: 37  ITLSVMLATIMQALDTTIANVALPHMQGSMGATQDQISWVLTSYIVAAAIFMPLTGFLTA 96

Query: 72  QYGRKPMLMIALSIFALGSVICAFAMNMPWLVAGRIVQGLGSGGLMSLSQALIGELVPPR 131
           + GRK + M A+  F + S++C  A N+  +V  R++QG+    L+ LSQ+++ +  PP 
Sbjct: 97  RIGRKRVFMWAVVGFTIASMLCGAAQNLEQIVLFRLLQGVFGASLVPLSQSVLLDSYPPE 156

Query: 132 ERARFQGYFSSLFAVASIGGPVLGGVLVTYLSWQWLFWFNLPLVGIALYRLARFQFVQSS 191
                   +     V  I GP LGG L  Y +W+W+F+ NLP   +A + LA +   ++ 
Sbjct: 157 RHGSAMALWGVGVMVGPILGPSLGGWLTEYYNWRWVFYINLPFGLLAWFGLAAY-VKETP 215

Query: 192 RKSEASIDVAGLILFPSMMTLIIYWLSAGGHYFPWFSVTSISLVSAFV--LTSLLFIAQQ 249
                  D+ G  +  S+    +  L   G    WFS   I ++ A +  +   LFIA  
Sbjct: 216 LDHSRKFDLLGFAML-SLAIGALQMLLDRGESLDWFSSREI-VIEAIIAGMAFYLFIAHI 273

Query: 250 KRVTASFLPLRLLARREIHIPLLSTFIFAACLFALIFFLPIFLQLGLRVNAAQSGLLLIP 309
                 F+   L   R   + L+  FI    L A +  LP F+Q  L       G LL P
Sbjct: 274 FTHKHPFIEPGLFKDRNFSVGLIFIFIIGIILLATMALLPPFMQTLLGYPVIDVGYLLAP 333

Query: 310 LSCGIIGGAYTTGKVIAKTGVPKFLPVFGMSLSSCAFAVLAMF--SLSAPVVSAIAALCG 367
              G +    T GK+  K  V ++    G+ L+  +   +  F  +++   +     + G
Sbjct: 334 RGVGTMIAMMTVGKLAGKVDV-RYQIFLGLMLTILSLWEMTGFNTNITGWDIVRTGVIQG 392

Query: 368 LGLGTV-MPSTQVLVQTLAGK-ANLGRITAMASLSRSLGASVG 408
           LGLG + +P + +   TLA K  N G  TA+ SL R++G+S+G
Sbjct: 393 LGLGFIFVPLSTITFATLAAKYRNEG--TALFSLMRNIGSSIG 433