Pairwise Alignments

Query, 429 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 485 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 97.8 bits (242), Expect = 6e-25
 Identities = 68/197 (34%), Positives = 99/197 (50%), Gaps = 15/197 (7%)

Query: 230 LFNLIYWVMSASLTLLLTLTWFLTRLNLQKVAAQRHVYI--DNLTRLNNR-----HFLNK 282
           L N  +  ++ SL + + +  F++ + L +   +  +    D LT   NR     +F   
Sbjct: 287 LLNTFWGNLALSLVVTIGIL-FISNMTLGRYQRKLEIMASTDKLTGAANRQVFEEYFHQA 345

Query: 283 ISTKFIEHPHSIAAMIDIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGE 342
           +    +        +IDIDHFKK+ND YGH  GD +L+ V + LR  ++  D + R+GGE
Sbjct: 346 LDKAKLSQTSISILLIDIDHFKKVNDSYGHSVGDLVLKTVTNLLRSQLKPQDILCRWGGE 405

Query: 343 EFLLLFQAHSNKEAWYMLDRLR-----QRVKDDHSLYGTTISIGFTFIDGSLPA--AISR 395
           EFL+L        A  + +R R     + +K +      T+SIG        PA   I R
Sbjct: 406 EFLVLLPEMDLSRAAELAERFRDSISQRELKVNGVHIAITVSIGVAEYQKLEPAEDLIKR 465

Query: 396 ADTALYQAKEAGRNQVV 412
           AD ALYQAKEAGRNQVV
Sbjct: 466 ADLALYQAKEAGRNQVV 482