Pairwise Alignments

Query, 516 a.a., NADH-quinone oxidoreductase subunit L from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., NAD(P)H-quinone oxidoreductase subunit D from Synechococcus elongatus PCC 7942

 Score = 82.0 bits (201), Expect = 5e-20
 Identities = 118/439 (26%), Positives = 185/439 (42%), Gaps = 58/439 (13%)

Query: 46  NTLFAIGQASINLVPVDGLGIVMAILVSLLGWVITRFAHRYLQGEAQQARFVTATLFTLS 105
           N   A+   S+ LV + GL   +AIL S   W I            +   F    L    
Sbjct: 79  NWSLAVDGLSMPLVLLTGLVTTLAILAS---WNIN----------VKPKLFHFLLLLLYG 125

Query: 106 CVALLVTSQHLLVIVLAWSGTSVGLHRLLTFY--PERKAARVVAHKKFLVSRFAEICLLL 163
               + T+Q +++  L W    V ++ L++ +  P+R+ A   A K  L +  A + +L+
Sbjct: 126 AQIAVFTAQDMMLFFLVWELELVPVYLLISIWGGPKRQYA---ATKFILYTALASLFILV 182

Query: 164 ALGLIYLDVGSLSLQEIHFALNAQDSLPLSLTGAALLLAFAAILKTAQLPLHGWLIQVM- 222
           A   +     S S       L         L  A  L+AF   +K +  PLH WL     
Sbjct: 183 AGLALAFSGDSFSFDLTELGLKDYSLWLELLAYAGFLIAFG--VKLSIFPLHTWLPDAHG 240

Query: 223 EAPTPVSALLHAGVVNMGGFVLLRVAELIGLVPSAQW----LLVIVGSLTAVLAGMVMLT 278
           EA  P S LL   ++ MGG+ L+R    + L+P A      +L ++G +  +   +    
Sbjct: 241 EANAPGSMLLAGILLKMGGYALIRFN--VQLLPEAHIRFAPVLAVLGIVNIIYGALNAFA 298

Query: 279 RISIKVRLAWSTCAQMGFMLMEI----GLGLYELALLHLVAHSLYKAYAFLSSGEAVERA 334
           + ++K ++A+S+ + MGF+L+ I     LGL   ALL +++H L  A  F  +G A ER 
Sbjct: 299 QDNLKRKIAYSSISHMGFVLLGIAAYNSLGL-NGALLQMLSHGLIAAALFFLAGVAYERT 357

Query: 335 RLHDFQAPQSVNGKAVGALLAVGLSAALILILHHLWQSLTSNLHLP--NAVVAILA--LG 390
             H  Q PQ             GL+  + +       +  ++L LP  +  V+ L   LG
Sbjct: 358 --HTLQIPQ-----------ISGLAKQMPITFALFTVTAMASLALPGMSGFVSELTVFLG 404

Query: 391 FAPLLWQSGRFTPSGLSLGVLRVALLTQLYFVWHLLFAG-----LAPELRPASPLALSFV 445
           F   ++ SG  T + L   V  V     L  +   +F G     L   L  A P  L FV
Sbjct: 405 FTDSVYSSGFRTVTILLAAVGLVLTPMYLLSMLRRIFYGTYNIQLGQVLADAKPREL-FV 463

Query: 446 MFCFITLYLMQVLLCLYPK 464
            FC   L +  + +  YPK
Sbjct: 464 AFC---LLVPTLAIGFYPK 479