Pairwise Alignments

Query, 516 a.a., NADH-quinone oxidoreductase subunit L from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., proton-conducting transporter membrane subunit from Rhodopseudomonas palustris CGA009

 Score =  262 bits (670), Expect = 2e-74
 Identities = 186/485 (38%), Positives = 257/485 (52%), Gaps = 33/485 (6%)

Query: 31  IAKFATLAGFIAMLGN--TLFAIGQASINLVPVDGLGI---------VMAILVSLLGWVI 79
           +A+ A L  F+   G    L  +G A+  L+ + G+G+          M +LV  +GW++
Sbjct: 35  MAEAAALLAFLITAGALAVLIMVGPATSPLIGIAGVGLSARLDAVSATMLLLVGFVGWIV 94

Query: 80  TRFAHRYLQGEAQQARFVTATLFTLSCVALLVTSQHLLVIVLAWSGTSVGLHRLLTFYPE 139
            R+A  YL GEAQQ  F+      ++ V LLV S +L+ +   W  TS  LHRLL FYP 
Sbjct: 95  VRYARTYLDGEAQQGAFLGWLCTAIAAVLLLVQSGNLVQLAACWIATSECLHRLLLFYPN 154

Query: 140 RKAARVVAHKKFLVSRFAEICLLLALGLIYLDVGSLSLQEIHFALNAQDSLPLSLTGAAL 199
           R  A+  A KK L +      +L  + L+     S  +  I+ A  A D+ P +   AA 
Sbjct: 155 RATAQRAARKKRLFASIGAAAMLGGVTLLATAYHSTDIATINAAARAGDA-PAAAMIAAG 213

Query: 200 LLAFAAILKTAQLPLHGWLIQVMEAPTPVSALLHAGVVNMGGFVLLRVAELIGLVPSAQW 259
           LLA AA+LK+AQ P HGWL +VMEAPTPVSALLHAGV+N GGF+L+R A+L+  VP    
Sbjct: 214 LLAVAALLKSAQFPTHGWLTEVMEAPTPVSALLHAGVINAGGFLLIRFADLMMTVPGVLA 273

Query: 260 LLVIVGSLTAVLAGMVMLTRISIKVRLAWSTCAQMGFMLMEIGLGLYELALLHLVAHSLY 319
           +L +VG  TA+   +VMLT+ ++K  LAWST AQMGFM++E GL L+ LALLH+VAHSLY
Sbjct: 274 VLAMVGGFTALFGALVMLTQPAVKTSLAWSTVAQMGFMMLECGLALFPLALLHIVAHSLY 333

Query: 320 KAYAFLSSGEAVERARLHDFQAPQSV-NGKAVG-ALLA-----VGLSAALILIL---HHL 369
           KA+AFL+SG AVE+        P +V +G AV  A LA     V + A   L+L   H  
Sbjct: 334 KAHAFLASGGAVEQIVAIRRPGPIAVPSGTAVARAFLAALAIYVAIGAGFGLVLGFDHKP 393

Query: 370 WQSLTSNLHLPNAVVAILALGFAP----LLWQSGRFTPSGLSLGVLRVALLTQLYFVWHL 425
            QSL     L   V  +LA G A     LL +      +  + G   +    +    W L
Sbjct: 394 PQSLALGAILVFGVAYLLAQGLADAAPRLLTRRSAIYSAATAAGYFALQTAAE----W-L 448

Query: 426 LFAGLAPELRPA--SPLALSFVMFCFITLYLMQVLLCLYPKSRLSLWLYPWVYHGFYLDE 483
               L P L P       +S  +  F  + + Q L  L+     +  L   + +G Y++ 
Sbjct: 449 TSGTLPPPLAPGRLEWTLISLAVLSFGGIAIAQALFPLWTSHPATAGLRIHLSNGLYINA 508

Query: 484 TFTRL 488
              RL
Sbjct: 509 ALDRL 513