Pairwise Alignments

Query, 303 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., transcriptional activator NhaR (RefSeq) from Shewanella loihica PV-4

 Score =  134 bits (336), Expect = 3e-36
 Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 6/290 (2%)

Query: 14  MRHLNFHHLHYFWTVAKEGHLTRAAQQLNVSQSALSSQIRQLEGQLGHDLFVRQGRSLQL 73
           M HLN++HL+YFW V K+G + +AA+ L ++   ++ QIR LE +L   LF R GR+L+ 
Sbjct: 1   MSHLNYNHLYYFWMVHKKGSVAKAAETLCLTPQTVTGQIRVLEQRLNGTLFKRVGRNLEP 60

Query: 74  TEVGHLVLEYAESIFNLSGELLSIMESGELQRVQQLRIGSVATLSRNFQENFLRPVL-GK 132
           TE+G LV  YA+ +F+LS E+L I+   +   +    +G    LS+      L  V+   
Sbjct: 61  TELGELVFRYADKMFSLSYEMLDILNYQKDNNI-LFEVGIADALSKALASRVLLSVVPSD 119

Query: 133 SDVRLILSSSTLEDLLGQLQMHKLDLILSNRPVPSDSTQPWRCKRIAQQSVCLVGPPSDT 192
             + L    +T E L+ +L+ HKLD+ILS+    S        K++ +   C V   S T
Sbjct: 120 GSMHLACYEATHESLMERLRAHKLDMILSDCAGESLKYPEILSKKLGE---CGVAFFSST 176

Query: 193 LRRYQFPQDLPKVKTLVPGASSEIRLQFDLYCEQLGLAVTPYAEVDDMAMLRLLARDVEG 252
                FP  L + K L+PG  + +  Q   + ++ GL VT   E DD AM++      +G
Sbjct: 177 TYDKPFPACLEEGKLLIPGKRTSLGQQLHHWFDENGLDVTILGEFDDAAMMKAFGFFKQG 236

Query: 253 VTVVPEVVVQDEIETGRLCNYGTLDAVTESFYAITTKRHFDMSIVNRLLD 302
           + V P +  QD I    +   G  D + E ++ +  +R      V  LL+
Sbjct: 237 IFVAPSIYKQD-ILAHDMQILGETDDIKEVYHVMFAERMIQHPAVKSLLE 285