Pairwise Alignments
Query, 556 a.a., lipid A modification system glycine--protein ligase AlmE from Vibrio cholerae E7946 ATCC 55056
Subject, 5372 a.a., Amino acid adenylation from Pseudomonas syringae pv. syringae B728a
Score = 157 bits (396), Expect = 1e-41
Identities = 167/559 (29%), Positives = 245/559 (43%), Gaps = 63/559 (11%)
Query: 7 TDLLQREGYGVVHNQFINNMAMYCETRHSILAAIQANR-HAPALWVKQKTYTYQEMTDMA 65
TD + + + F N++ T H A A R A AL +++T +Y E+ A
Sbjct: 469 TDTFKMQTWNAGQPHFANDL-----TIHQQFEARAAERPDAAALVFEEQTLSYGELNARA 523
Query: 66 LSLSDYWHLQGVQ---RVAILSVRDLAAYSAIWASYLGGMTYIPLNARATTEQIQETLIA 122
++ GV+ RVAI R A + G Y+PL+ E++ TL
Sbjct: 524 NQVAHRLLALGVRPDDRVAICVERGPAMIIGLLGILKSGAGYVPLDPAYPLERLAYTL-- 581
Query: 123 TQCDSIMVDAQQLSRLSSLLETCIDRLHIYALPDVDVEPLRQQYPQHTFHTVQITEQDVE 182
DS V LS+ S + + + L DVD++ R PQ V + D+
Sbjct: 582 --GDSAPVAL--LSQQSVQPALPVSDVPLIYLDDVDLQDERACNPQ-----VSVRPSDL- 631
Query: 183 LLVVKYHLDNEHEYAYIMQTSGSTGKPKRIAVSYSNLHCYISQIDKLFPLNAQDRVGQYS 242
AY++ TSGSTG PK + V + N+ S F N QD +
Sbjct: 632 --------------AYVIYTSGSTGLPKGVMVEHRNVARLFSATQDWFGFNEQDVWALFH 677
Query: 243 DLTFDLSVHDIFYSLISGACLYVVPELAKLSPAEFIH---HHQLTVWLSVPTVIELALQR 299
FD SV +I+ +L+ G L +VP+L SP +F + +TV P+ +
Sbjct: 678 SFAFDFSVWEIWGALLHGGRLLIVPQLVSRSPEDFYNLLCSAGVTVLNQTPSAFRQLIAA 737
Query: 300 QTLTPHSLPSLRLSFFCGQALLHDLAEQW---QQATQQPVINLYGPTECTIAVTYHRFVA 356
Q + SLR F G+AL + + W + ++N+YG TE T+ VTY+
Sbjct: 738 QD-DKEQVHSLRQVIFGGEALETAMLKPWYARKVNASTQLVNMYGITETTVHVTYYPLQP 796
Query: 357 HSG--MASVPIGRAFEEECLAIINEQGELMRFESAPEGYRGELLLSGKQLVKGYLN-DPL 413
+ + PIG+ + L +++ G + P G GEL + G + +GYLN D L
Sbjct: 797 EDARRVGASPIGKRIPDLQLYLLDAYGHPL-----PPGAVGELYVGGAGVARGYLNRDEL 851
Query: 414 NT----QSAFFQHEGRLWYRSGDIVT-KSNGVLIHLGRRDHQVKIAGQRVELEEIETVVR 468
NT F G YRSGD+ +G L +LGR D QVKI G R+EL EIE
Sbjct: 852 NTTRFLDDPFASAPGARMYRSGDLGRWLPDGSLEYLGRNDEQVKIRGFRIELGEIEA--- 908
Query: 469 RVTQAHSV--AIVPWPLSESGYASGTVAFVDTHTQWQPD-LWL-SQCKQQLNPTFVPKRW 524
R++ V A+V E G VA+V +PD WL Q + L +P +
Sbjct: 909 RLSACEGVRDAVVVVREDEPG-DQRLVAYVIGTAGQEPDATWLREQLRLSLAEHMLPSAF 967
Query: 525 YAIEQLPRNANGKTDIKAL 543
++E P ANGK D KAL
Sbjct: 968 VSLEAFPLTANGKLDRKAL 986
Score = 133 bits (335), Expect = 2e-34
Identities = 159/555 (28%), Positives = 236/555 (42%), Gaps = 83/555 (14%)
Query: 31 ETRHSILAA-IQANRHAPALWVKQKTYTYQEMTDMALSLSDYWHLQGVQ---RVAILSVR 86
+T H + A ++A+ A A +Y E+ + A L+ + GVQ VAIL R
Sbjct: 2674 QTVHGLFEAQVRAHPEACAAIHDGVAVSYAELNNRANRLARHLLGLGVQPGDSVAILLER 2733
Query: 87 DLAAYSAIWASYLGGMTYIPLNARATTEQIQETLIATQCDSIMVDAQQLSRLSSLLETCI 146
++ A Y+PL+ A E+ Q +I +++ Q+S + +
Sbjct: 2734 SHDLLASQLAVLKCAAVYVPLDVNAPVER-QSFMIEDSRARVLLTHSQVSLTTGAQRVDL 2792
Query: 147 DRLHIYALPDVDVEPLRQQYPQHTFHTVQITEQDVELLVVKYHLDNEHEYAYIMQTSGST 206
D L + L D+ P + +V AYIM TSGST
Sbjct: 2793 DGLTLERLKGTDLA-----LPPQSSESV----------------------AYIMYTSGST 2825
Query: 207 GKPKRIAVSYSNLHCYISQI---DKLFPLNAQDRVGQYSDLTFDLSVHDIFYSLISGACL 263
G PK + V H IS++ + NAQDRV S+ FD S D++ L++G C+
Sbjct: 2826 GTPKGVLVP----HRAISRLAINNGYADFNAQDRVAFASNPAFDASTLDVWAPLLNGGCV 2881
Query: 264 YVVPELAKLSPAEF----IHHHQLTVWLSVPTVIELALQRQTLTPHSLPSLRLSFFCGQA 319
V+ + LSP F + +W++ L Q + + LR G
Sbjct: 2882 VVIGQHDLLSPLNFQRLLLEQSVSVLWMTA----GLFHQYASGLGEAFSRLRYLIVGGDV 2937
Query: 320 LLHDLAEQWQQATQQP---VINLYGPTEC-TIAVTYHRFVAHSGMASVPIGRAFEEECLA 375
L D A + P ++N YGPTE T + TY + G S+PIG+ L
Sbjct: 2938 L--DPAVIGRVLANNPPQHLLNGYGPTEATTFSATYE--IVSVGNGSIPIGKPVGNSRLY 2993
Query: 376 IINEQGELMRFESAPEGYRGELLLSGKQLVKGYLNDPLNTQSAFF------QHEGRLWYR 429
+++ QG + AP G GEL + G+ + +GYL+ T F + RL YR
Sbjct: 2994 VLDNQG-----QPAPLGVGGELYIGGQGVARGYLHRDELTLEKFVADPFDSDPQARL-YR 3047
Query: 430 SGDIVT-KSNGVLIHLGRRDHQVKIAGQRVELEEIETVVRRVTQAHSVAIVPWPLSESGY 488
+GD+V +++G L +LGR D QVKI G RVEL EIE + + ++
Sbjct: 3048 TGDLVRWRADGNLEYLGRNDEQVKIRGFRVELGEIEARLAEHAEVREAVVLC-----RQD 3102
Query: 489 ASGTVAFVDTHTQWQPDLWL------SQCKQQLNPTFVPKRWYAIEQLPRNANGKTDIKA 542
A G V T QP+ L S + L VP + ++ LP ANGK D KA
Sbjct: 3103 APGDKRLVAYVTAQQPETALDIEHLRSHLQGLLPDYMVPAAYVQLDSLPLTANGKLDRKA 3162
Query: 543 L----QQQLASQTYE 553
L Q L S+ YE
Sbjct: 3163 LPVPDAQSLVSRGYE 3177
Score = 129 bits (325), Expect = 2e-33
Identities = 152/547 (27%), Positives = 243/547 (44%), Gaps = 71/547 (12%)
Query: 31 ETRHSILAAIQANRHAPALWVK--QKTYTYQEMTDMALSLSDYWHLQGVQ---RVAILSV 85
+T H + A QA R AL V ++ +Y+++ + A L+ QGVQ RV I
Sbjct: 4795 QTIHGMFEA-QAERTPEALAVVHGEQRLSYRQLNERANRLAHALRKQGVQPDSRVGICVE 4853
Query: 86 RDLAAYSAIWASYLGGMTYIPLNARATTEQIQETLIATQCDSIMVDAQQLSRLSSLLETC 145
R + A G Y+PL+ ++I L Q + + L +T
Sbjct: 4854 RGPEMVVGLLAILKAGGGYVPLDPAYPVDRIAYML------------QDSAPAAVLAQTA 4901
Query: 146 IDRLHIYALPDVDVEPLRQQYPQHTFHTVQITEQDVELLVVKYHLDNEHEYAYIMQTSGS 205
L L DV V + +VQ E + HL AY++ TSGS
Sbjct: 4902 TQSL----LADVSVPVINLDQDSWQDESVQNPEVPG---LTSVHL------AYLIYTSGS 4948
Query: 206 TGKPKRIAVSYSNLHCYISQIDKLFPLNAQDRVGQYSDLTFDLSVHDIFYSLISGACLYV 265
TG PK + + + N +++ F +A ++ + L FDL+V++ F L SG + V
Sbjct: 4949 TGLPKGVMIEHRNTVNFLTWAHSAFAGSALEKTLFSTSLNFDLAVYECFGPLTSGGSIKV 5008
Query: 266 VPELAKLSPAEFIHHHQLTVWLSVPTVIELALQRQTLTPHSLPSLRLSFFCGQALLHDLA 325
V + +L + H + + +VP+ ++ L+ +L P S+ ++ ++ G+AL L
Sbjct: 5009 VQNVLELQHGD----HDIGLINTVPSALKALLEINSL-PKSVHTVNVA---GEALKRSLV 5060
Query: 326 EQ-WQQATQQPVINLYGPTECTIAVTYHRFVA---HSGMASVPIGRAFEEECLAIINEQG 381
E +++ Q + NLYGP+E T TY +VA G A IG+ +++EQ
Sbjct: 5061 ENLFEKTGVQRLCNLYGPSETT---TYSSWVAMDREQGFAP-HIGKPVGNTQFYLLDEQQ 5116
Query: 382 ELMRFESAPEGYRGELLLSGKQLVKGYLN-DPLNTQ----SAFFQHEGRLWYRSGDIVT- 435
+L+ P G GE+ + G + +GYLN D L + F +H YR+GD+
Sbjct: 5117 QLV-----PLGVAGEIYIGGAGVARGYLNRDDLTAERFLADTFSRHPQARMYRTGDLGRY 5171
Query: 436 KSNGVLIHLGRRDHQVKIAGQRVELEEIETVVRRVTQAHSVAIVPWPLSESGYASGTVAF 495
+G + +LGR D QVKI G R+EL EI+ + + H A+V G +
Sbjct: 5172 LPDGNIEYLGRNDDQVKIRGFRIELGEIDARLAKHPAVHE-AVVTAREDVPGDKRLVAYY 5230
Query: 496 VDTHTQWQPDL-----WLSQCKQQLNPTFVPKRWYAIEQLPRNANGKTDIKAL----QQQ 546
Q +P + WL QL VP + ++ +P NGK D KAL +
Sbjct: 5231 TVLSAQTEPAIDSLRGWL---LGQLPAYMVPVAYVRLDAMPLTPNGKLDRKALPAPGEGA 5287
Query: 547 LASQTYE 553
L S+ YE
Sbjct: 5288 LISRGYE 5294
Score = 125 bits (315), Expect = 3e-32
Identities = 153/559 (27%), Positives = 242/559 (43%), Gaps = 77/559 (13%)
Query: 23 INNMAMYCETRHSILAAIQANR-HAP---ALWVKQKTYTYQEMTDMALSLSDYWHLQGV- 77
+N A+ ++ A I+A AP A V + Y EM A +L+ + GV
Sbjct: 3712 LNTAALQVHDEQTVHAMIEARAASAPEGVAAQVGEHCLHYGEMNHRANALAHHLISLGVG 3771
Query: 78 --QRVAILSVRDLAAYSAIWASYLGGMTYIPLNARATTEQIQETLIATQCDSIMVDAQQL 135
RVA+++ R L A+ A G Y+P++ E+I L+A +++ Q L
Sbjct: 3772 VDDRVAVMARRGLDTLVAMLAVLKAGAGYVPVDPSHPDERIAY-LLADSAPKVVLTQQAL 3830
Query: 136 SRLSSLLETCIDRLHIYALPDVDVEPLRQQYPQHTFHTVQITEQDVELLVVKYHLDNEHE 195
+ S + ET A P + + R ++PQ ++ V L N
Sbjct: 3831 T--SRVPET--------AAPVIAFD--RPEWPQ------RLENPQVAGL-------NAAH 3865
Query: 196 YAYIMQTSGSTGKPKRIAVSYSNLHCYISQIDKLFPLNAQDRVGQYSDLTFDLSVHDIFY 255
AY++ TSGSTG+PK + V + + I + F L A + FD +++
Sbjct: 3866 LAYVIYTSGSTGQPKGVMVEHRTVGNLIDWHCQAFGLQAGSHTASVAGFGFDAMAWEVWP 3925
Query: 256 SLISGACLYVVPELAKLSPAEFIHHHQLTVWLSVP--------TVIELALQRQTLTPHSL 307
+L +GA L++ P + + L W++ P V E A R S
Sbjct: 3926 ALCAGATLHLPPADVGNEQIDAL----LDWWIAQPLQVAFLPTPVAEYAFSRNL----SH 3977
Query: 308 PSLRLSFFCGQALLHDLAEQWQQATQQPVINLYGPTECTIAVTYHRFVAHSGMASVPIGR 367
P+LR G D Q+Q+ VIN YGPTE T+ T R + S+ IG+
Sbjct: 3978 PTLRTLLIGG-----DRLRQFQRDPGFTVINNYGPTEATVVATSGRLLPD---GSLDIGK 4029
Query: 368 AFEEECLAIINEQGELMRFESAPEGYRGELLLSGKQLVKGYLNDPLNTQSAFFQH----- 422
+ +++E +L+ P G GEL ++G+ + +GYLN P T F +
Sbjct: 4030 PITNTRVYLLDEHQQLV-----PLGVAGELYVAGEGVARGYLNRPEMTAERFLRDPFHCD 4084
Query: 423 -EGRLWYRSGDIVT-KSNGVLIHLGRRDHQVKIAGQRVELEEIETVVRRVTQAHSVAIVP 480
+ R+ YR+GD+ ++G L +LGR D QVKI G RVEL EIE + ++ A+V
Sbjct: 4085 ADARM-YRTGDLARWNADGTLDYLGRNDDQVKIRGLRVELGEIEAQLSQLPGIEE-ALVL 4142
Query: 481 WPLSESGYASGTVAFVDTH-TQWQPDLWLSQCKQQLNPTF-VPKRWYAIEQLPRNANGKT 538
E G F++ + P L + P + VP + + P ANGK
Sbjct: 4143 AREDEPGQPRLAAYFIERDGSLSMPVSELRAALLAVLPGYMVPSAFVRLAAWPLTANGKV 4202
Query: 539 DIKAL----QQQLASQTYE 553
D +AL ++ L + YE
Sbjct: 4203 DRRALPLPDREALPGRDYE 4221
Score = 87.4 bits (215), Expect = 1e-20
Identities = 98/384 (25%), Positives = 161/384 (41%), Gaps = 39/384 (10%)
Query: 192 NEHEYAYIMQTSGSTGKPKRIAVSYSNL----HCYISQ-IDKLFPLNAQDRVGQYSDLTF 246
N AY++ TSGSTG+PK +A+ ++ L H I+Q ++ P + R Q++ L F
Sbjct: 1722 NAQHLAYLIYTSGSTGQPKGVAMPHAPLVNLMHWQIAQTVEHRRP---RQRTLQFAALGF 1778
Query: 247 DLSVHDIFYSLISGACLYVVPELAKLSPAEFIHH--HQLTVWLSVPTVIELALQRQTLTP 304
D++ +IF +L +G L ++ +L H Q L +P + AL +
Sbjct: 1779 DVAFQEIFSTLCAGGELSLIHSDMRLDFRRLFQHICEQRIERLYMPCIALQALAEAVVAE 1838
Query: 305 HSLPSLRLS--FFCGQAL--LHDLAEQWQQATQQPVINLYGPTECTIAVTYHRFVAHSGM 360
P L G+ L + + + + N YGPTE +
Sbjct: 1839 PEQPECLLQDVITAGEQLRITEPMRHFFARLNDARLHNHYGPTESHVVTAMTLEGNPQAW 1898
Query: 361 ASVP-IGRAFEEECLAIINEQGELMRFESAPEGYRGELLLSGKQLVKGYLNDPLNTQSAF 419
++P IG+ + +++E P G GEL + G + +GYLN T F
Sbjct: 1899 PTLPSIGQPVANTRIYLLDEH-----MRPVPVGVAGELYIGGVCVARGYLNRDDLTADRF 1953
Query: 420 F------QHEGR---LWYRSGDI-VTKSNGVLIHLGRRDHQVKIAGQRVELEEIETVVRR 469
+ +G Y++GD+ + +G +I++GR D Q+KI G R+EL EIE + +
Sbjct: 1954 IADPFATREDGNPCARLYKTGDLGCWQDDGNIIYMGRNDDQIKIRGFRIELGEIEARLGQ 2013
Query: 470 VTQAHSVAI-----VPWPLSESGYASGTVAFVDTHTQWQPDLWLSQCKQQLNPTFVPKRW 524
A+ VP Y S + D + L +P +
Sbjct: 2014 YPGLRDAAVLAREDVPGEKRLVAYFSVQAG----QALPEADHMRLHLQAVLPDYMIPAAY 2069
Query: 525 YAIEQLPRNANGKTDIKALQQQLA 548
+E+LP + NGK D +AL Q A
Sbjct: 2070 VHLEKLPVSPNGKLDRRALPQPSA 2093