Pairwise Alignments

Query, 461 a.a., class II fumarate hydratase from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., fumarate hydratase, class II from Pseudomonas stutzeri RCH2

 Score =  390 bits (1001), Expect = e-113
 Identities = 217/459 (47%), Positives = 289/459 (62%), Gaps = 6/459 (1%)

Query: 6   RIEKDSMGEVKVPADALYQAQTQRAVDNFTLSRYTMPSAFIAALAYIKQAAAMTNAQLGH 65
           R E DS+G V+VP  A + AQTQR++ NF +    MP   + ALA IK+AAA  N ++G 
Sbjct: 3   RTETDSLGPVEVPDQAYWGAQTQRSLSNFEIGTERMPIEVLHALALIKKAAARVNDRIGD 62

Query: 66  LEGDIAQAIANASQAVIDGQYAKQFPIDVFQTGSGTSSNMNANEVIATLASRELGYA--- 122
           L  D+A+ I  A+  ++ GQ+  QFP+ V+QTGSGT SNMN NEVIA  A+   G     
Sbjct: 63  LPPDVARLIEQAADEILHGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGGTRGG 122

Query: 123 ---VSPNDHVNMGQSSNDVIPTAIQVSAAINIEQQLLPALAHLSQTLADKQSELADVVKT 179
              V PNDHVN  QSSND  PTA+ ++AA  +  +LLPALA LS  LA+       ++KT
Sbjct: 123 KSPVHPNDHVNRAQSSNDCFPTAMHIAAAKAVHAKLLPALAELSGGLAELSVRHGKLIKT 182

Query: 180 GRTHLMDAMPVTFAQELGGWKSQIDHAAQGISHALSPIKALAQGGTAVGTGINADPRFAR 239
           GRTH+MDA P+TF QE+  + +Q+D A + I H L  +  LAQGGTAVGTG+N+   FA 
Sbjct: 183 GRTHMMDATPITFGQEMSAFVAQLDIAERTIRHTLPAVYELAQGGTAVGTGLNSPHGFAE 242

Query: 240 IFADNLSQLSHVAFQPSDNFFYNLSSQDCVVGLSGQLKTAAVALMKIANDLRWMNSGPLA 299
             A  L+ LS + F  + N F  L+  + +V LSG LKT AVALMK+ANDLR + SGP  
Sbjct: 243 AIAAELAALSGLPFVSAPNKFAALAGHEPLVALSGALKTLAVALMKLANDLRLLGSGPRG 302

Query: 300 GLGEIELQGLQPGSSIMPGKVNPVIPEAVTMVAAQVIGNDTTITVAGQSGNFQLNVMLPV 359
           G  E+ L   +PGSSIMPGKVNP   EA++M+A QV+GND TI+ A   G+ QLNV  PV
Sbjct: 303 GFAEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVMGNDMTISFAASQGHLQLNVFKPV 362

Query: 360 IAHNLLESIELLTNACHALADKAIATFKVRHDNLEKALAKNPILVTALNPVIGYLKAADI 419
           I HNLL+SI+LL++ C       IA  +     + + L +  +LVTALNP IGY +AA+I
Sbjct: 363 IIHNLLQSIQLLSDGCRNFNTHCIAGLEPDPARMAEHLERGLMLVTALNPHIGYDRAAEI 422

Query: 420 AKKAYQQGRAILDVAAEETDLDRATLEALLDPKKLTQGG 458
           AKKAY QG  + + + E   L     +  + P+ + + G
Sbjct: 423 AKKAYAQGTTLREASMELGYLSSEEFDQWVRPETMLESG 461