Pairwise Alignments

Query, 445 a.a., cytochrome ubiquinol oxidase subunit I from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., cytochrome bd quinol oxidase subunit 1 apoprotein from Pseudomonas syringae pv. syringae B728a

 Score =  399 bits (1025), Expect = e-115
 Identities = 208/453 (45%), Positives = 287/453 (63%), Gaps = 15/453 (3%)

Query: 2   LDTLMLSRIQFAANISFHILFPTITIALGWILVFFKWRYLRTQVSEWLDLYYFWVKVFAL 61
           L+ + L+RIQFA  ISFHILFP ITI L   L   +  +L+T+   + DLY+FW K+FA+
Sbjct: 4   LEAIDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTRDDVYRDLYHFWSKIFAV 63

Query: 62  TFALGVVSGITMSFQFGTNWPGFMERVGNVAGPLLGYEVMTAFFMEATFLGVMLFGRGRV 121
            F +GVVSG+ M++QFGTNW  F +  G V GPLL YEV+TAFF+EA FLGVMLFG  RV
Sbjct: 64  NFGMGVVSGLVMAYQFGTNWSRFSDFAGAVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRV 123

Query: 122 PEWLHTLSTVLVAVGTSLSAFWILVLNSWMHTPAGYEVIDGVVHVTSWKEVIFNPSMPYR 181
              LH  STV+VA+GT +S FWIL  NSWM TP G+E+IDG V  T W  V+FNPS PYR
Sbjct: 124 GRNLHFFSTVMVAIGTLISTFWILSSNSWMQTPQGFEIIDGRVIPTDWFAVVFNPSFPYR 183

Query: 182 LAHTLLASALTASFLIAGISAYQVLRNAKHQAAKMGLKVAVSVAALAIPVQILVGDLHGL 241
           L H  +A+ +  +F +   +A+ +LR     A +  L +A+ +A L  PVQ +VGD HGL
Sbjct: 184 LTHMAIAAFVATAFFVGSSAAWHLLRGRDTPAVRKMLSMAMWMALLVAPVQAVVGDFHGL 243

Query: 242 NTLEHQPAKIAAMEGVWQT--ERGAPLLLFALPNEETRSNDFALGIPNLASLILTHDMNG 299
           NTL+HQPAKIAA+EG W+   +   PL+LF +P+ +     +A+ IP L SLILTH ++ 
Sbjct: 244 NTLKHQPAKIAAIEGHWENVGDEPTPLILFGIPDMKEERTKYAVEIPYLGSLILTHSLDK 303

Query: 300 EIVGLDAFAP-DHPPVAPLFFGFRVMVGVGVLMLLVSWFGAWRVWRNKP----LPKPYMY 354
           ++  L  F P D P    +F+ FRVMV +G+LM+     G W +W  K       +P++Y
Sbjct: 304 QVPALKEFKPEDRPNSTIVFWSFRVMVALGMLMIFT---GLWSLWLRKRGTLYNSRPFLY 360

Query: 355 ALIGMTFSGWVATIAGWYVTEIGRQPWLVSGVLRTAEAVTPVASSSVGISLTLYLITYVV 414
             + M  SG +A +AGW+ TEIGRQPW+V G++RTA+A +  + + + I+L L+++ Y V
Sbjct: 361 LALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTADASSGHSVAQMSITLVLFVVVYFV 420

Query: 415 LLVAYVHTLFYLARK-----TGHAPQVSPSSTK 442
           L    +  +  L RK       H P   P   +
Sbjct: 421 LFGTGLGYMMRLVRKGPKAYVEHVPHGGPGQQR 453