Pairwise Alignments

Query, 445 a.a., cytochrome ubiquinol oxidase subunit I from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., Cytochrome bd ubiquinol oxidase, subunit I (NCBI) from Rhodospirillum rubrum S1H

 Score =  400 bits (1028), Expect = e-116
 Identities = 213/457 (46%), Positives = 296/457 (64%), Gaps = 16/457 (3%)

Query: 3   DTLMLSRIQFAANISFHILFPTITIALGWILVFFKWRYLRTQVSEWLDLYYFWVKVFALT 62
           D  +L+RIQFA  +SFHI+FP  TI L   L   +  +L T+   +LDLY  WV+VFALT
Sbjct: 7   DATLLARIQFAFTVSFHIIFPAFTIGLASYLAVLEATWLITKRRVFLDLYKHWVRVFALT 66

Query: 63  FALGVVSGITMSFQFGTNWPGFMERVGNVAGPLLGYEVMTAFFMEATFLGVMLFGRGRVP 122
           F +GVVSG+ MS+QFGTNW  F +  G++ GPL+GYEV+TAFF+EA FLGVMLFG  RV 
Sbjct: 67  FGMGVVSGLVMSYQFGTNWGPFAKATGSILGPLMGYEVLTAFFLEAGFLGVMLFGLTRVG 126

Query: 123 EWLHTLSTVLVAVGTSLSAFWILVLNSWMHTPAGYEVIDGVVHVTSWKEVIFNPSMPYRL 182
             LH  +T++VAVGT +SAFWIL  NSWMHTP G+ + +G+     W E++FNPS PYRL
Sbjct: 127 PRLHFFATLMVAVGTLISAFWILAANSWMHTPTGHILENGIFRPGDWMEIVFNPSFPYRL 186

Query: 183 AHTLLASALTASFLIAGISAYQVL--------RN--AKHQAAKMGLKVAVSVAALAIPVQ 232
            H + A+ LT + ++   +A ++L        RN   K +A+++   +A+ + AL  P+Q
Sbjct: 187 VHMVTAAYLTTALVVGAAAARRLLLLRKSGEGRNDPGKGEASRLAFAMAMGMIALTAPLQ 246

Query: 233 ILVGDLHGLNTLEHQPAKIAAMEGVWQ-TERGAPLLLFALPNEETRSNDFALGIPNLASL 291
             +GDLHGLNTLEHQPAKIAAMEG WQ T   APL+LF LP+ E  +  +A+ IP L SL
Sbjct: 247 AFLGDLHGLNTLEHQPAKIAAMEGHWQETISPAPLILFGLPDAEAETTRYAVEIPYLGSL 306

Query: 292 ILTHDMNGEIVGLDAF-APDHPPVAPLFFGFRVMVGVGVLMLLVSWFGAWRVWRNKPLPK 350
           ILTH ++G + GL AF   D PPV   F+ FRVMVG+G+LM+ +     W   R +    
Sbjct: 307 ILTHSLDGALQGLKAFPEADRPPVVIPFWSFRVMVGLGLLMIALGALAVWARLRGRLYDS 366

Query: 351 P--YMYALIGMTFSGWVATIAGWYVTEIGRQPWLVSGVLRTAEAVTPVASSSVGISLTLY 408
           P  Y +AL+ M  +G++A +AGW  TE+GRQP++V G++RT++ V+P+ +  V  SL  +
Sbjct: 367 PALYRFALL-MGPAGFIAVLAGWVTTEVGRQPFVVYGLMRTSDMVSPIGAPGVAASLLAF 425

Query: 409 LITY-VVLLVAYVHTLFYLARKTGHAPQVSPSSTKAA 444
           ++ Y  V  V   + L  +A+    +       T+AA
Sbjct: 426 IVVYFAVFGVGIRYLLKMMAQPVARSKDDPVPFTRAA 462