Pairwise Alignments

Query, 445 a.a., cytochrome ubiquinol oxidase subunit I from Vibrio cholerae E7946 ATCC 55056

Subject, 518 a.a., cytochrome d ubiquinol oxidase, subunit I (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  211 bits (537), Expect = 4e-59
 Identities = 148/512 (28%), Positives = 229/512 (44%), Gaps = 81/512 (15%)

Query: 3   DTLMLSRIQFAANISFHILFPTITIALGWILVFFKWRYLRTQVSEWLDLYYFWVKVFALT 62
           + + LSR+QFA    +H LF  +T+ L ++L      Y+ T    + D+  FW K+F + 
Sbjct: 5   EVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMVSLYVMTDKHIYKDMTKFWGKLFGIN 64

Query: 63  FALGVVSGITMSFQFGTNWPGFMERVGNVAGPLLGYEVMTAFFMEATFLGVMLFGRGRVP 122
           FALGV +G+ M FQFGTNW  +   VG++ G  L  E + AFF+E+T +G+  FG  R  
Sbjct: 65  FALGVSTGLAMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTLVGMFFFGWDRFS 124

Query: 123 EWLHTLSTVLVAVGTSLSAFWILVLNSWMHTPAG----YEVIDGVVHVTSWKEVIFNPSM 178
           +  H   T LVA+G++LSA WILV N WM  P G    YE +   + +TS+ EV+FNP  
Sbjct: 125 KRQHLAVTWLVALGSNLSALWILVANGWMQNPVGSVFNYETMR--MEMTSFAEVVFNPVA 182

Query: 179 PYRLAHTLLASALTASFLIAGISAYQVLRNAKHQAAKMGLKVAVSVAALAIPVQILVGDL 238
             +  HT+ +  +T +  +  IS+Y +L+      A+    +A S    AI   I++GD 
Sbjct: 183 QVKFVHTVASGYVTGAMFVLAISSYYILKKRDLPFARRSFAIAASFGMAAILSVIVLGDE 242

Query: 239 HGLNTLEHQPAKIAAMEGVWQTERG-APLLLFALPNEETRSNDFALGIPNLASLILTHDM 297
            G    E Q  K+AA+E  W TE   A       PN+ET   DFA+ IP    ++ T  +
Sbjct: 243 SGYKVGEAQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETMETDFAVKIPYAMGIVATRSL 302

Query: 298 NGEIVGLDAFAPDH-----------------------PPVAPLFFGFRVMVGVGVLML-- 332
           + ++ G+     +H                       P +   F   +V +G G+L+   
Sbjct: 303 DEQVTGIHDLISEHEVRIRNGMKAYAMLVKLRAGDTSPELRAEFEAAKVDLGYGLLLKRY 362

Query: 333 ----------------------LVSWFGAWRVWRNKPLPKPYMYALI-------GMTFSG 363
                                 +   F ++RV         +++A          +  + 
Sbjct: 363 TNNVVDATEEQIKAAAKDSIPNVAPMFWSFRVMVGLGFVMLFVFAAAFWQSTRHQIEENK 422

Query: 364 WVATIA------GWYVTEIG-------RQPWLVSGVLRTAEAVTPVASSSVGISLTLYLI 410
           WV   A       W   E G       RQPW +S VL T  + + + +  +  S+    +
Sbjct: 423 WVLKAALFSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTTGDLWFSIISISL 482

Query: 411 TYVVLLVAYVHTLFYLARKTGHAPQVSPSSTK 442
            Y VLLV  +  +   AR       + PSS K
Sbjct: 483 FYTVLLVIEIFLMLKFAR-------LGPSSLK 507