Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., putative Cytochrome bd2, subunit II from Pseudomonas fluorescens FW300-N2E2

 Score =  229 bits (583), Expect = 9e-65
 Identities = 125/331 (37%), Positives = 188/331 (56%), Gaps = 16/331 (4%)

Query: 5   LPEIYLLLLGFTVFMYAVLDGYDLGVGILLPR-NDVAQRDRMIASIGPFWDANETWLVLA 63
           LP I+ +++ F + MY ++DG+DLG+GIL P       RD M+ ++ P WD NETWLVL 
Sbjct: 5   LPLIWAVVIIFGIMMYVIMDGFDLGIGILFPFVKGERDRDVMMNTVAPVWDGNETWLVLG 64

Query: 64  VGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSL 123
              L  AFP A+S++ + LYLP  LMLI LI RGVAF+FR KAKA+ +  WD  F  GSL
Sbjct: 65  GAGLFGAFPLAYSVVLSALYLPLILMLIGLIFRGVAFEFRFKAKAEKRHLWDKAFIGGSL 124

Query: 124 LAALTQGYMIGRYVVGFESAPEAYA---------FAVLSALCVAAAYVYIGGAWLVLKTE 174
            A   QG  +G ++ GFE     +          FA+   L + AAY  +G  WL++KTE
Sbjct: 125 TATFFQGVALGAFIDGFEVVNRQFVGGSLGWFTPFAMFCGLALIAAYALLGCTWLIMKTE 184

Query: 175 GELQVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATI 234
           G+LQ +    +R   ++    +  VS+  P  ++ +A RWF+ P +    PVPI+V  T+
Sbjct: 185 GKLQEQMHDLARPLAFVVLAVIGIVSIWTPLAHADIAARWFTLPNLFWFLPVPILVLVTL 244

Query: 235 LVVDRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPET 294
             + R + R           PF   +++  L + GL  S +P IVP  ++   A+S P++
Sbjct: 245 YGLFRAVARNANYT------PFILTLVLIFLGYSGLGISLWPNIVPPSISIWDASSPPQS 298

Query: 295 LMVVGIGVVIVMPTILLYTFFVYRIFKGKAT 325
              + +G + ++P IL+YTF+ Y +F+GK T
Sbjct: 299 QGFMLVGTLFIIPLILVYTFWSYYVFRGKVT 329