Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., ubiquinol oxidase subunit II from Pseudomonas fluorescens FW300-N2E3

 Score =  213 bits (543), Expect = 4e-60
 Identities = 115/326 (35%), Positives = 179/326 (54%), Gaps = 16/326 (4%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLPR-NDVAQRDRMIASIGPFWDANETWLVLAVGI 66
           I+ +++ F V MY ++DG+DLG+GIL P   D  +RD M+ ++ P WD NETWL+L    
Sbjct: 11  IWGVIIAFGVMMYVIMDGFDLGLGILFPLIPDRQERDVMMNTVAPVWDGNETWLILGGAA 70

Query: 67  LLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSLLAA 126
           L  AFP A+S+I   LYLP   ML  LI RGVAF+FR KA  + +  WD+ F  GSLLA 
Sbjct: 71  LYGAFPLAYSVILEALYLPLIFMLAGLIFRGVAFEFRFKASPEKRHIWDMAFIGGSLLAT 130

Query: 127 LTQGYMIGRYVVGFESAPEAY---------AFAVLSALCVAAAYVYIGGAWLVLKTEGEL 177
             QG +IG Y+ G       +         AF +     +  AY  +G  WL++KTEG L
Sbjct: 131 FCQGIVIGAYIAGIPVVNRQFAGGTLDWLSAFPLFCGFGLIVAYALLGSTWLLVKTEGML 190

Query: 178 QVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATILVV 237
           + R   ++R   +     V  + +  P ++  +A RWF+    ++   + I+    +  +
Sbjct: 191 ESRMRHYTRPLAFTLTAVVAVLCVWTPMLHPEIAIRWFTHAHTVVFGGLLILGVLALFGL 250

Query: 238 DRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPETLMV 297
            R L+   +       WPF   + +  L ++GLA+S +P IVP  ++  +AAS P + + 
Sbjct: 251 LRSLRHYHS------HWPFVFTLALVFLGYIGLAFSIWPNIVPPSISLWEAASPPSSQLF 304

Query: 298 VGIGVVIVMPTILLYTFFVYRIFKGK 323
           + IG + ++P IL+YT + Y +F+GK
Sbjct: 305 ILIGTLFILPIILMYTCWSYYVFRGK 330