Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

 Score =  118 bits (296), Expect = 2e-31
 Identities = 102/365 (27%), Positives = 168/365 (46%), Gaps = 59/365 (16%)

Query: 3   QYLPEIYLLLLGFTVFMYAVLDGYDLGVGILLPRNDVAQRDRMIA--SIGPFWDANETWL 60
           + L  ++ +L+G  +  +A+ DG+D+G   L+P       +R +A  +I P WD N+ W 
Sbjct: 5   EVLKLVWWVLIGVLLIGFALTDGFDMGAMALMPFVGKTDNERRVAINTIAPHWDGNQVWF 64

Query: 61  VLAVGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADH-KDHWDLCFK 119
           + A G L  A+P  +++ F+ LY    L+L AL  R V FD+R+K +    +  WD    
Sbjct: 65  ITAGGALFAAWPMVYAVAFSGLYWAMLLVLFALFCRPVGFDYRSKVEDPRWRSAWDWALF 124

Query: 120 IGSLLAALTQGYMIGRYVVG--------FESAPEAYAFAVLSALCVAAAYVYI------G 165
           +G  + AL  G   G   +G          S  +   FA+L+   +    V +      G
Sbjct: 125 VGGAVPALVFGVAFGNLFLGLPFQLDELMRSTYQGSFFALLNPFALLCGIVSLSMLSAHG 184

Query: 166 GAWLVLKTEGELQVRAARWSR------KAGWLAA-----LGV-----LSV----SLVNPW 205
           GAWL+L+T+G L  R+ + +R        G+LAA     LGV     LSV    + +NP 
Sbjct: 185 GAWLMLRTDGALAERSRQATRLCALVFLVGFLAAGLWLMLGVQGFTQLSVTDPGAALNPL 244

Query: 206 VNSAVAE-------RWFSFPEVILLAPVPIIVFATILVVDRYLKRVPTVNDAGVQWPFFG 258
           ++  V +        +  +P + L+APV  I+ A + ++        + N  G    F G
Sbjct: 245 LDKQVVQDNAGWLGNYGRYP-ITLIAPVAGILGALLALLG------SSRNSGGAS--FVG 295

Query: 259 VVLIFGLSFLGLAYSFFPEIVP------GIMTAQQAASSPETLMVVGIGVVIVMPTILLY 312
             L+   S     ++ FP + P        +T   A SS +TL ++ +   I +P IL Y
Sbjct: 296 TSLMIVGSICTAGFALFPFVFPSSLDPASSLTIWDAVSSKKTLGIMFVVACIFVPLILCY 355

Query: 313 TFFVY 317
           T + Y
Sbjct: 356 TLWSY 360