Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

 Score =  215 bits (548), Expect = 1e-60
 Identities = 117/328 (35%), Positives = 180/328 (54%), Gaps = 16/328 (4%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLPR-NDVAQRDRMIASIGPFWDANETWLVLAVGI 66
           I+ +++ F + MY V+DG+DLGVGIL P   D + RD M+ ++ P WD NETWLVL    
Sbjct: 8   IWAVIIIFGIMMYVVMDGFDLGVGILFPFVQDSSDRDVMMNTVAPVWDGNETWLVLGGAG 67

Query: 67  LLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSLLAA 126
           L  AFP A+S++ + LYLP   ML+ LI RGVAF+FR K   + +  WD  F  GSL+A 
Sbjct: 68  LFAAFPLAYSVVLSALYLPIIFMLMGLIFRGVAFEFRFKVVRERQHVWDKAFIGGSLVAT 127

Query: 127 LTQGYMIGRYVVGFESAPEAYA---------FAVLSALCVAAAYVYIGGAWLVLKTEGEL 177
             QG ++G ++ G      AYA         F++   L +  AY  +G  WL+++T G+L
Sbjct: 128 FFQGVVLGAFISGLPVEDRAYAGGALDWLTPFSLFCGLALIVAYALLGCTWLMMRTAGDL 187

Query: 178 QVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATILVV 237
           Q R         W   +    VSL  P  +  +AERWFS P ++   PVP++V      +
Sbjct: 188 QRRMHDIGIPLVWAVLVVTGIVSLWTPLTHPDIAERWFSMPNLLYFMPVPVLVLLCAFGL 247

Query: 238 DRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPETLMV 297
            R ++R           PF   + +  L + GL  S +P I+P  ++  +AA+ P++   
Sbjct: 248 LRSIQRYAN------YMPFLLTLALIFLGYSGLGISLWPNIIPPSVSIWEAAAPPQSQGF 301

Query: 298 VGIGVVIVMPTILLYTFFVYRIFKGKAT 325
             +G ++++P IL+YT + Y +F+GK +
Sbjct: 302 TLVGALLILPLILMYTAWSYYVFRGKVS 329