Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 383 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Xanthomonas campestris pv. campestris strain 8004

 Score =  145 bits (366), Expect = 2e-39
 Identities = 112/364 (30%), Positives = 174/364 (47%), Gaps = 51/364 (14%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLP---RNDVAQRDRMIASIGPFWDANETWLVLAV 64
           I+ LLLG  +  +AV+DG+DLGVG LLP   R D A+R  ++ +IGP W+ N+ WLVL  
Sbjct: 14  IWWLLLGILLIGFAVMDGFDLGVGALLPFVARTD-AERRLVVNTIGPVWEGNQVWLVLGG 72

Query: 65  GILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADH-KDHWDLCFKIGSL 123
           G +  A+P  +++ F+  YL   ++L ALI+R V F +R K      + +WD    +G  
Sbjct: 73  GAIFAAWPPLYAVSFSGFYLAMFVILFALILRPVGFKYRGKLPGQRWRTNWDWALFVGGF 132

Query: 124 LAALTQGYMIGRYVVG----FESAPEAY----------AFAVLSALCVAAAYVYIGGAWL 169
           + AL  G  +G  V+G    F+ +   +           FA+L+ L   A  V  G A L
Sbjct: 133 IPALIMGVAVGNVVLGVPFHFDDSLRVFYTGSFFGLLTPFALLAGLLSVAMLVAHGAAML 192

Query: 170 VLKTEGELQVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPII 229
           VLKT+G +  RAAR+   A   A LGV   +    WV   +     +   V   A  P+ 
Sbjct: 193 VLKTDGPVADRAARYGSIA---AVLGVALFAGAGAWVAFGLPGYVVTSATVTDAATDPLG 249

Query: 230 VFATILVVDRYLKRVPTVNDAGVQWPFFGVVLIF-----------GLSF----------- 267
             A +     +L    ++    V  P  G++ +            GL+F           
Sbjct: 250 KTAALTAAGGWLHNYRSMPATAVA-PLVGLLGLALNAALLRARRGGLAFIASGSAIAGII 308

Query: 268 LGLAYSFFPEIVP------GIMTAQQAASSPETLMVVGIGVVIVMPTILLYTFFVYRIFK 321
           L + ++ FP ++P        +T   A+SS  TL ++ +   + +P I+ YT +VYR+ K
Sbjct: 309 LTVGFALFPFLLPSSSAPGSSLTLWDASSSRLTLWIMLLATAVFLPIIIAYTTWVYRVLK 368

Query: 322 GKAT 325
           GK T
Sbjct: 369 GKVT 372