Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., putative Cytochrome bd2, subunit II from Xanthomonas campestris pv. campestris strain 8004

 Score =  162 bits (410), Expect = 1e-44
 Identities = 108/326 (33%), Positives = 162/326 (49%), Gaps = 28/326 (8%)

Query: 13  LGFTVFMYAVLDGYDLGVGILLPRN-DVAQRDRMIASIGPFWDANETWLVLAVGILLIAF 71
           L FTV  Y VLDG DLGVG+L   N   A R  M  SI P WD NETWLVL  G LL  F
Sbjct: 16  LAFTVVTYVVLDGTDLGVGMLFAANRSDADRHLMAYSILPVWDGNETWLVLGGGSLLAMF 75

Query: 72  PTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDH-WDLCFKIGSLLAALTQG 130
           P+A+++     Y+P  +ML+ALI RGVA ++R +   D +    D+ F + SLLA   QG
Sbjct: 76  PSAYAIFLNATYVPLVVMLLALICRGVALEYRDQLGTDRRRRVLDVVFMVASLLATFCQG 135

Query: 131 YMIGRYVVGFESAPEAYA---------FAVLSALCVAAAYVYIGGAWLVLKTEGELQVRA 181
            + G Y+ G       YA         F +   + +   Y+ +G  WLV ++EG+LQ RA
Sbjct: 136 VVAGTYLAGVAHRAGQYAGNGREWLQPFPLFCGVALVVGYLLLGACWLVWRSEGQLQQRA 195

Query: 182 ARWSR----KAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATILVV 237
              +R      G L  LGV+ ++ + P     + +   S         VP+      L+V
Sbjct: 196 RHQARVLGIVLGALLTLGVVWLARLTPIYAQRLGDAHIS---------VPLGTSVLGLMV 246

Query: 238 DRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPETLMV 297
             YL     +       P F V+ +   ++ G+    +P ++P  +T  QAAS P +  V
Sbjct: 247 AMYL----LMRSRHAFLPLFAVLGVVVATYAGVLAIVYPMVLPPDITLAQAASPPASQGV 302

Query: 298 VGIGVVIVMPTILLYTFFVYRIFKGK 323
           + +   +++P  L Y+ + + +F+GK
Sbjct: 303 MLLAFAVLVPCTLAYSSYGFYVFRGK 328