Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., cytochrome bd quinol oxidase subunit 2 apoprotein from Pseudomonas syringae pv. syringae B728a

 Score =  220 bits (560), Expect = 4e-62
 Identities = 126/332 (37%), Positives = 182/332 (54%), Gaps = 18/332 (5%)

Query: 5   LPEIYLLLLGFTVFMYAVLDGYDLGVGILLP-RNDVAQRDRMIASIGPFWDANETWLVLA 63
           LP I+ +++ F + MY V+DG+DLG+GIL P   D + RD M+ ++ P WD NETWLVL 
Sbjct: 5   LPLIWAIIIVFGIMMYVVMDGFDLGIGILFPFMKDSSDRDVMMNTVAPVWDGNETWLVLG 64

Query: 64  VGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSL 123
              L  AFP A+S++ + LYLP   ML+ LI RGVAF+FR KA    +  WD  F  GSL
Sbjct: 65  GAALFGAFPLAYSVVLSALYLPLMFMLMGLIFRGVAFEFRFKATELKRHWWDKAFIGGSL 124

Query: 124 LAALTQGYMIGRYVVGFESAPEAYA---------FAVLSALCVAAAYVYIGGAWLVLKTE 174
            A   QG  +G Y+ G       +A         F +   L +  AY  +G  WL++KTE
Sbjct: 125 AATFFQGVALGTYIEGIPVVDRQFAGGSLDWLSPFPMFCGLALIVAYALLGCTWLIMKTE 184

Query: 175 GELQVRAARWSRKAGWLAALGVLS-VSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFAT 233
           G LQ      +R    LA L V+  VSL  P  ++ +A RWFS P +    PVPI+V  T
Sbjct: 185 GSLQKAMHDLARPLA-LAVLAVMGVVSLWTPLAHADIAHRWFSMPNLFWFMPVPILVLVT 243

Query: 234 ILVVDRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPE 293
           +  + + + R           PF   +L+  L + GL  S +P I+P  ++   AA+ P+
Sbjct: 244 MYSLFKAVARNAHYT------PFLLTLLLIFLGYSGLGISLWPNIIPPSVSIWTAAAPPQ 297

Query: 294 TLMVVGIGVVIVMPTILLYTFFVYRIFKGKAT 325
           +   + +G + ++P IL YTF+ Y +F+GK T
Sbjct: 298 SQGFMLVGTLFIIPFILGYTFWSYYVFRGKVT 329