Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., cytochrome d ubiquinol oxidase, subunit II from Synechococcus elongatus PCC 7942

 Score =  204 bits (519), Expect = 3e-57
 Identities = 114/334 (34%), Positives = 185/334 (55%), Gaps = 19/334 (5%)

Query: 1   MMQYLPEIYLLLLGFTVFMYAVLDGYDLGVGIL-LPRNDVAQRDRMIASIGPFWDANETW 59
           ++ +LP+++ ++L   +F+Y VLDG+DLGVGIL L  +   +R  ++ S+G  WDANETW
Sbjct: 4   LLHFLPQVWFVILALFLFLYVVLDGFDLGVGILSLTTSSENRRTILMTSLGNIWDANETW 63

Query: 60  LVLAVGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFK 119
           LVL  G L  AFP A+  I   LYLP  LM+  LI+R VAF+FR    A+ K  W+L F 
Sbjct: 64  LVLMGGALFGAFPLAYGTILNALYLPIFLMIFGLILRAVAFEFR--ENAERKRFWNLAFG 121

Query: 120 IGSLLAALTQGYMIGRYVVGFESAPEAYAF----------AVLSALCVAAAYVYIGGAWL 169
            GS LAAL QG+ +G  + G  +    +            ++L +L +  AYV IG  +L
Sbjct: 122 SGSFLAALAQGFALGSVLTGIRTDAGGHYIGGLWDWLNWHSLLVSLTLIQAYVLIGSTYL 181

Query: 170 VLKTEGELQVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPII 229
           +++T G LQ    + ++ A     +G ++++   P+++ +  +R    P +     +P++
Sbjct: 182 IMRTAGSLQETHFQTAKLATITTLVGAIAITATTPFISESARDRLLQVPFIYGFTLIPVL 241

Query: 230 VFATILVVDRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAA 289
               I ++ R L R           PF   VL+F L+F+GL    FP ++P  +T  QAA
Sbjct: 242 GVLLIAILWRSLSRKQEFA------PFIWTVLLFLLTFIGLGLLVFPYVIPPQITIYQAA 295

Query: 290 SSPETLMVVGIGVVIVMPTILLYTFFVYRIFKGK 323
           +SP  L+ + + +  ++P +L Y  + Y +F+GK
Sbjct: 296 ASPSALVFMIVFIGFLIPIMLFYNIYNYIVFRGK 329