Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., quinol oxidase subunit II transmembrane protein from Sinorhizobium meliloti 1021

 Score =  211 bits (536), Expect = 3e-59
 Identities = 125/331 (37%), Positives = 182/331 (54%), Gaps = 21/331 (6%)

Query: 5   LPEIYLLLLGFTVFMYAVLDGYDLGVGILLPR-NDVAQRDRMIASIGPFWDANETWLVLA 63
           LP I+  ++ F V  Y VLDG+DLGVGIL P   +   RD M+ S+ P WD NETWLVL 
Sbjct: 5   LPLIWAAIIAFAVLAYVVLDGFDLGVGILFPFFPEKHDRDVMMNSVAPVWDGNETWLVLG 64

Query: 64  VGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSL 123
            G LL  FP A++ I   LY P   MLI LI RGVAF++R + +   +  W+  F  GS+
Sbjct: 65  GGGLLAVFPLAYATILPALYAPIIAMLIGLIFRGVAFEYRWRTQRG-EFLWNWAFAGGSM 123

Query: 124 LAALTQGYMIGRYVVGFESAPEAYA---------FAVLSALCVAAAYVYIGGAWLVLKTE 174
           LAA  QG  +G  V G      AY          F++ + L +   Y  +G  WLV+KT 
Sbjct: 124 LAAFAQGLALGALVQGIPVENRAYVGGWWDWLTPFSIATGLAIVIGYALLGATWLVMKTR 183

Query: 175 GELQVRAARWSRKA--GWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFA 232
           GEL  RA   + +     +AA+G+  VSL  P++     ERWF +P  I    VP++V  
Sbjct: 184 GELAERARGVALRTALATVAAMGI--VSLWTPFLEPVYLERWFGWPTAIFSVIVPLLVLG 241

Query: 233 TILVVDRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSP 292
            + ++   LK +   +D     PF   + +F L ++G+  SF+P +VP  +T   AA+  
Sbjct: 242 CLYLL---LKGIRDRHDV---QPFIAALGLFVLGYIGIGISFYPFMVPPSLTIWDAAAPD 295

Query: 293 ETLMVVGIGVVIVMPTILLYTFFVYRIFKGK 323
           E+L  + +G ++++P IL YT + Y +F+GK
Sbjct: 296 ESLAFLLVGALVLVPMILTYTAYAYWVFRGK 326