Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., Cytochrome bd ubiquinol oxidase, subunit II (NCBI) from Rhodospirillum rubrum S1H

 Score =  214 bits (546), Expect = 2e-60
 Identities = 130/335 (38%), Positives = 183/335 (54%), Gaps = 18/335 (5%)

Query: 5   LPEIYLLLLGFTVFMYAVLDGYDLGVGILLP-RNDVAQRDRMIASIGPFWDANETWLVLA 63
           LP I+ +L+ F VF Y VLDG+DLG+GIL P      +R+R + SI P WD NETWLVL 
Sbjct: 5   LPLIWGMLIAFAVFAYVVLDGFDLGIGILFPFLGGEDERNRAMNSIAPVWDGNETWLVLG 64

Query: 64  VGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSL 123
            G L  AFP A+S++ T  Y P   ML+AL+ RGVAF+FR  AK   K  W   F  GSL
Sbjct: 65  GGGLFAAFPEAYSVLMTAFYAPVIAMLLALVFRGVAFEFRFMAKRG-KRFWTAGFFAGSL 123

Query: 124 LAALTQGYMIGRYVVGFESAPEAYA---------FAVLSALCVAAAYVYIGGAWLVLKTE 174
           +AAL QG M+G +V G       YA         F++L+   V   Y  +G  WL +KT+
Sbjct: 124 MAALCQGMMLGAFVQGIAFEDGRYAGGWFDWFSPFSLLTGAAVVCGYSLLGAGWLAIKTD 183

Query: 175 GELQVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATI 234
           G L   A R +R AG +  + +++VS + P V    AERWF  P+++  AP PI V    
Sbjct: 184 GPLADFAFRIARLAGVVTLVAIVAVSALTPLVAPLAAERWFG-PQMLWHAPAPIAVVVLG 242

Query: 235 LVVDRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPET 294
            V+ R + R   +        F   + +F   ++G A S +P I+P  +T + AA+    
Sbjct: 243 AVLLRAIARRRELT------LFLSGLGLFATCYIGFALSKYPYIIPDHVTFRAAAADEAA 296

Query: 295 LMVVGIGVVIVMPTILLYTFFVYRIFKGKATDLSY 329
           L  +  G ++++P IL YT + Y +F+GK     Y
Sbjct: 297 LAFLLPGALVLIPIILGYTAYAYWVFRGKTGHEGY 331