Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., cytochrome d ubiquinol oxidase subunit II from Rahnella sp. WP5

 Score =  221 bits (564), Expect = 2e-62
 Identities = 128/328 (39%), Positives = 182/328 (55%), Gaps = 20/328 (6%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLPRN-DVAQRDRMIASIGPFWDANETWLVLAVGI 66
           I+  ++ F   MY V+DG+DLG+GIL P N D  +RD M+ ++ P WD NETWLVL    
Sbjct: 7   IWFGIIVFANLMYIVMDGFDLGIGILFPFNKDKTERDMMVNTVAPVWDGNETWLVLGGAA 66

Query: 67  LLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSLLAA 126
           L  AFP A+S+I   L +P  LML  LI RGVAF+FR KA   H+  WD  F  GS++A 
Sbjct: 67  LYGAFPLAYSVITDALTIPLTLMLFGLIFRGVAFEFRFKATEKHRPFWDKSFITGSIVAT 126

Query: 127 LTQGYMIGRYVVGFESAPEAYAFAVLSALC---------VAAAYVYIGGAWLVLKTEGEL 177
            +QG  +G  + GFE     +  + LS L          +  AY  +G  WL++KTE  L
Sbjct: 127 FSQGVAVGAVLNGFEVTGRTFTGSALSWLAPFPIFCGIGLVVAYALLGCTWLIMKTENAL 186

Query: 178 QVRAARWSRK--AGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATIL 235
             +  R ++      LA  GV  +S+  P  ++ +A RWFS P +I   PVP++V A   
Sbjct: 187 HQKMCRLAKPLVITLLAITGV--ISIWTPLTHADIAHRWFSMPNLIAFLPVPVLVLACTW 244

Query: 236 VVDRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPETL 295
            + R +K     N A    PF   + +  L F GL  S +P I+P  ++   AASS E+L
Sbjct: 245 GILRAIK-----NHAHYM-PFLLTLALIFLGFSGLGISIWPNIIPPAISIWDAASSEESL 298

Query: 296 MVVGIGVVIVMPTILLYTFFVYRIFKGK 323
             + +G V ++P IL+YTF+ Y +F+GK
Sbjct: 299 AFMLVGAVFIIPVILIYTFWSYYVFRGK 326