Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., cytochrome d ubiquinol oxidase subunit II from Rhodopseudomonas palustris CGA009

 Score =  214 bits (546), Expect = 2e-60
 Identities = 119/326 (36%), Positives = 187/326 (57%), Gaps = 17/326 (5%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLPRNDVAQ-RDRMIASIGPFWDANETWLVLAVGI 66
           I+  ++ F VF+Y V+DG+DLG+GIL P     + RD ++ S+ P WD NETWLVL  G 
Sbjct: 8   IWAFIIAFAVFVYVVMDGFDLGLGILFPLFRAKRDRDVIMNSVAPVWDGNETWLVLGGGG 67

Query: 67  LLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSLLAA 126
           L  AFP A++++   LY P   ML+ L  RGVAF+FR + + + ++ WD+ F +GSL+A 
Sbjct: 68  LFAAFPLAYAVLMPALYTPIIAMLLGLAFRGVAFEFRWRTQRE-RNRWDVAFFLGSLVAT 126

Query: 127 LTQGYMIGRYVVGFESAPEAYA---------FAVLSALCVAAAYVYIGGAWLVLKTEGEL 177
           L QG  +G  + G      AYA         F++L+ + +   Y  +G  WLV+KT G+L
Sbjct: 127 LAQGVALGALLQGVHVEGRAYAGGWWDWLTPFSLLTGVALVIGYALLGATWLVMKTTGDL 186

Query: 178 QVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATILVV 237
           +  A R SR       + +++VS   P+++   ++RWF++P V+  A VP+   A  +V 
Sbjct: 187 RDTAYRLSRWLLLALLVAIVAVSAATPFLSYDYSQRWFAWPNVLATAQVPL---AVAIVT 243

Query: 238 DRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPETLMV 297
              L+ +    D     PF   + +F LS+ GL  S +P +VP  +T  QAA+   + + 
Sbjct: 244 ALLLRALAQRRD---YQPFLLTLCLFALSYAGLGISLWPYVVPRSITIWQAAAPENSQLF 300

Query: 298 VGIGVVIVMPTILLYTFFVYRIFKGK 323
           + +GV I++P IL YT + Y +F+GK
Sbjct: 301 MLVGVAILVPIILTYTAWAYWVFRGK 326