Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., cytochrome d ubiquinol oxidase subunit II from Rhodopseudomonas palustris CGA009

 Score =  204 bits (520), Expect = 2e-57
 Identities = 125/329 (37%), Positives = 183/329 (55%), Gaps = 24/329 (7%)

Query: 9   YLLLLGFTVFMYAVLDGYDLGVGILLP-RNDVAQRDRMIASIGPFWDANETWLVLAVGIL 67
           + +     + +Y VLDG+DLGVGIL P    V+ RD M+A++ PFWD NETWLVL   +L
Sbjct: 13  FAVAAAIVIGLYVVLDGFDLGVGILFPFAPRVSDRDAMMATLEPFWDGNETWLVLGGMVL 72

Query: 68  LIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSLLAAL 127
           L AFP A +++    Y+P  LML  L++RGVAF+FR++     +  W   F  GS +AA 
Sbjct: 73  LGAFPLAFAILLPAFYVPLCLMLFGLVIRGVAFEFRSQG-GRFQIVWSATFAAGSFIAAF 131

Query: 128 TQGYMIGRYV--------VGFESAPEAY--AFAVLSALCVAAAYVYIGGAWLVLKTEGEL 177
            QG ++G +V          F   P  +   F++ + L V AAY  +G  WLV KT G  
Sbjct: 132 CQGAVLGAFVGRSITVSDGAFAGGPFDWLGLFSIATGLGVVAAYGLLGACWLVWKTSGST 191

Query: 178 QVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPII-VFATI-L 235
           Q             A   ++ +S+  P+    +AERWF++P+ +LLAP+PII V A I +
Sbjct: 192 QNFGRELMLPTLLCAGAAIVLISVWTPFAKPQIAERWFAWPDALLLAPLPIIAVLAGIGI 251

Query: 236 VVDRYLKRVPTVNDAGVQW-PFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPET 294
           ++ R+ +R         +W P    +L+F  S  GL  S +PE +PG+MT  QA+S   T
Sbjct: 252 LLTRWSER---------EWAPLALSLLLFVTSLAGLGASVWPEAIPGVMTIWQASSMHRT 302

Query: 295 LMVVGIGVVIVMPTILLYTFFVYRIFKGK 323
            ++V   VVI+ P IL Y  + Y +F+GK
Sbjct: 303 QVIVAGAVVIIGPIILAYIGYGYWLFRGK 331