Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (RefSeq) from Shewanella loihica PV-4

 Score =  124 bits (310), Expect = 5e-33
 Identities = 100/359 (27%), Positives = 159/359 (44%), Gaps = 58/359 (16%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLP--RNDVAQRDRMIASIGPFWDANETWLVLAVG 65
           ++  L+G     +AV DG+D+GVG LLP    D  +R  MI SI P WD N+ WL+ A G
Sbjct: 10  VWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINSIAPHWDGNQVWLITAGG 69

Query: 66  ILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADH-KDHWDLCFKIGSLL 124
            L  A+P  +++ F+  Y+   L+L AL +R V FD+R+K +    +  WD    +G  +
Sbjct: 70  ALFAAWPMVYAVSFSGFYVAMMLVLFALFLRPVGFDYRSKIEDPRWRKAWDWALFVGGFV 129

Query: 125 AALTQGYMIGRYVVGFESAPEAY--------------AFAVLSALCVAAAYVYIGGAWLV 170
             L  G   G  + G     + Y               F +L+ L   +  +  G +WL 
Sbjct: 130 PPLIIGVAFGNLLQGVPFNFDEYLRATYHGGLFGLLNPFGLLAGLVSVSMIIMQGASWLQ 189

Query: 171 LKTEGELQVRAARWSRKAGWLAAL--------------GVLSVSLV------NPWVNSAV 210
           +KTEGEL+VRAA  ++ A  L A+              G +  S +      NP + +  
Sbjct: 190 MKTEGELRVRAATATQVAAALVAVLFTLAGVWLANGIDGYVVTSTIDTHGASNPALKTVA 249

Query: 211 AE--RWFS----FPEVILLAPVPIIVFATILVVDRYLKRVPTVNDAGVQWPFFGVVLIFG 264
            E   W +    +P  +L   + I +    L+  R+       N +G  + F  + +   
Sbjct: 250 VEAGAWLANYDKYPVTMLFPILGIAMPVLALLASRF-------NRSGFAFLFSSLAVAMV 302

Query: 265 LSFLGLAYSFFPEIVPG------IMTAQQAASSPETLMVVGIGVVIVMPTILLYTFFVY 317
           +   G A   FP ++P        +T   A +S  TL V+     I +P +L YT + Y
Sbjct: 303 ILTCGAA--MFPFVMPSSLEPNVSLTMWDATASHMTLTVMTWAAAIFVPIVLSYTIWTY 359