Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., cytochrome d oxidase, subunit II (cydB) from Sphingomonas koreensis DSMZ 15582

 Score =  120 bits (301), Expect = 5e-32
 Identities = 106/366 (28%), Positives = 168/366 (45%), Gaps = 63/366 (17%)

Query: 12  LLGFTVFMYAVLDGYDLGVGILLP---RNDVAQRDRMIASIGPFWDANETWLVLAVGILL 68
           LLG  +  +A+ DGYD+G   LLP   R DV +R  +I S+GP W+ ++ W +L  G + 
Sbjct: 16  LLGILLIGFALTDGYDMGAAALLPFVARTDVERR-MVINSVGPHWEGHQVWFILGGGAIF 74

Query: 69  IAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHK--DHWDLCFKIGSLLAA 126
            A+P  +++ F+  YL   L+L ALI+R V F +R+K +AD K    WD    +G L+  
Sbjct: 75  AAWPFVYAVSFSGFYLAMFLVLSALILRPVGFKYRSK-RADPKWRTRWDWALFVGGLVPP 133

Query: 127 LTQGYMIGRYVVG----FESAPEAY----------AFAVLSALCVAAAYVYIGGAWLVLK 172
           L  G  +G  + G     +    A+           F ++  L   A  V  G AWL +K
Sbjct: 134 LVFGIAVGNVLAGAPFRIDGDQRAWYEGGLLGLFTPFTLVCGLLSVAMLVLHGSAWLAIK 193

Query: 173 TE-GELQVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVF 231
            E G +  RA    R+ G +AAL  +++  +     + VA  W      ++ +P P+ + 
Sbjct: 194 VEHGPVHRRA----RRFGVVAALAAMTLFAIG---GAFVA--WTGLGYRVVASPGPLGLS 244

Query: 232 ATILVV---------DRYLK-----RVPTVNDAGVQWPFFGVV-LIFGLSFLG------- 269
             +  V         D Y         P +  AG     FG++    G +FLG       
Sbjct: 245 NPLRTVTEAAPGAWLDNYAAFPWTLAAPLLGFAGALLALFGILRQREGAAFLGSSLSATG 304

Query: 270 ----LAYSFFPEIVP------GIMTAQQAASSPETLMVVGIGVVIVMPTILLYTFFVYRI 319
               +  S FP I+P        +T   A+SS  TL+++ I  +I +P +L YT +  R+
Sbjct: 305 IIATVGLSMFPFILPSSIDPRSSLTVWNASSSESTLLLMLIVTLIFLPVVLAYTAWAMRV 364

Query: 320 FKGKAT 325
             G+ T
Sbjct: 365 MWGRVT 370