Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., cytochrome d ubiquinol oxidase, subunit II (RefSeq) from Shewanella sp. ANA-3

 Score =  216 bits (549), Expect = 8e-61
 Identities = 119/331 (35%), Positives = 184/331 (55%), Gaps = 16/331 (4%)

Query: 5   LPEIYLLLLGFTVFMYAVLDGYDLGVGILLPR-NDVAQRDRMIASIGPFWDANETWLVLA 63
           LP I+  ++ F   MY V+DG+DLG+GIL P  +D   RD M+ ++ P WD NETWLVL 
Sbjct: 5   LPLIWFGIIIFATLMYIVMDGFDLGIGILFPFIHDEDDRDVMVNTVAPVWDGNETWLVLG 64

Query: 64  VGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSL 123
              LL AFP A++++   L +P  +ML+ALI RGVAF+FR K+ A+ K  WD  F  GS+
Sbjct: 65  GASLLGAFPLAYAIVLEALTIPLLIMLLALIFRGVAFEFRFKSSAETKPFWDKAFMFGSI 124

Query: 124 LAALTQGYMIGRYVVGFESAPEAYA---------FAVLSALCVAAAYVYIGGAWLVLKTE 174
           +A   QG ++G ++ G     + ++         F++     +  AY  +G  WLV K  
Sbjct: 125 IATFAQGVVLGAFISGISVDGQRFSGSSFDWLSPFSLFCGFGLMLAYALLGATWLVKKCT 184

Query: 175 GELQVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATI 234
           G L+    + ++       + +  VSL  P+V   +A RWFS P +   APVP++V   +
Sbjct: 185 GTLKTTMQQLAKVLAVCLLMTIGIVSLWTPFVQPNIALRWFSLPNLFYFAPVPLLV---L 241

Query: 235 LVVDRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPET 294
           L     ++ + T +D     PF   + +  L F GL  S +P I+P  ++  QAA+   +
Sbjct: 242 LCTKALIRALNTEDD---YRPFLLTLALIFLGFSGLGISIWPHIIPPTISLWQAAAPESS 298

Query: 295 LMVVGIGVVIVMPTILLYTFFVYRIFKGKAT 325
           L  + IG ++++P IL YTF+ Y +F+GK T
Sbjct: 299 LGFMLIGALMIIPLILAYTFWSYYVFRGKVT 329