Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., probable ABC transporter permease protein from Synechococcus elongatus PCC 7942

 Score =  102 bits (255), Expect = 2e-26
 Identities = 96/424 (22%), Positives = 184/424 (43%), Gaps = 37/424 (8%)

Query: 8   MQEMAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHVSGGYATQ 67
           ++ + A +LR +LT+L +      +  ++ VG+G +       ++   N++ +  G    
Sbjct: 13  VKTLRANRLRSALTMLGIIIGNASVITMVGVGQGAQRLASEQFESLGPNVLFIVPGNQDT 72

Query: 68  THGRFHEGQALSLTEQDSQVLAALPMVKHALPSAEWQELITFADKRSWMMPYAVKSEYQA 127
             G     + L L +  + +   +P      P    ++L+T+  + S    + V   +  
Sbjct: 73  RRGGLDIPKTLVLADAVA-IATQVPTAGEVAPQVSTRQLVTYQGESSTTQVFGVTPSFLT 131

Query: 128 MNKLRLLPGGRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWFSGGELEQDPVGQIAKI 187
           +    +  G R+F+ +D ++  +V VLG  LA++LF  Q            +PVG   +I
Sbjct: 132 VRSFSVARG-RFFSDLDLSRAEQVAVLGSDLAIKLFGVQ------------NPVGASIRI 178

Query: 188 GAHEFTVIGVLAKNSGNIEQGSPIDYSGFTPFSTWQRFHPNQA------ISGINLEPRVG 241
               F VIGV+      +  G+  D + + P +T               +S I++  +  
Sbjct: 179 KGASFRVIGVMEPKGSFL--GNNQDDAVYLPLTTVSSRILGTTSPYGIEVSFISVAAKDA 236

Query: 242 SDRQALAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFLLRLQSFLGIIGFITLA 301
           +   A    +  +L++++    +D   V  Q   L+        L L   L  I  I+L 
Sbjct: 237 NSIDAAQFQITNLLRQRHRIIREDDFEVRSQKDVLTIVGTVTNGLTLM--LSAIAGISLL 294

Query: 302 VASLGITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITMGMGGIAGLGVTFAM 361
           V  +GI N+M  +V   T++IG+R A+GAT   I   ++ +++I   +GG  G G+    
Sbjct: 295 VGGIGIMNIMLVSVSERTQEIGLRKAIGATQKDILNQFMIEAVILALLGGAIGTGLGITG 354

Query: 362 VRLLAAI-PLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPANHAAKVTPLQ 420
           V  +A + PL+              +S   I I +   + +G+    +PA  AA++ P+ 
Sbjct: 355 VTAIALLTPLKAG------------VSPVAIAITVTISSGIGLFFGVVPARQAARLDPIV 402

Query: 421 ALQS 424
           AL+S
Sbjct: 403 ALRS 406