Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., ABC transporter permease protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  117 bits (292), Expect = 9e-31
 Identities = 116/440 (26%), Positives = 191/440 (43%), Gaps = 57/440 (12%)

Query: 6   QIMQEMAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQN-GNGNLIHVSGGY 64
           Q + EM   KLR +LT+L + +    +  +L+VGEG     ++ I++ G  NL+      
Sbjct: 15  QALGEMLHHKLRTALTLLGMIFGVGAVIAMLSVGEGAEREALKMIESMGIKNLV------ 68

Query: 65  ATQTHGRFHEGQALSLTEQDS---------QVLAALPMVKHALPSAEWQELITFADK-RS 114
               + R  EG+AL    + S           +  LP ++      + +    F+ + RS
Sbjct: 69  ---VNARPSEGEALKTVREHSIGLSLRDIESAMETLPFIEAYSAGKQVKVFGLFSVQGRS 125

Query: 115 WMMPYAVKSEYQAMNKLRLLPGGRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWFSGG 174
             +   V   Y  ++ L+L  G R     DE   R++ VLG + A  LF +         
Sbjct: 126 DALVQGVTPSYFDLSALKLAEG-RLLGDEDEQHFRQLAVLGPEAARSLFPRG-------- 176

Query: 175 ELEQDPVGQIAKIGAHEFTVIGVLAKNSGNIEQGSPIDYSG-----FTPFSTW---QRFH 226
               D VGQ  KI    FTV+GVL +          +   G     F P +T     +F 
Sbjct: 177 ----DAVGQRIKINHQWFTVVGVLDEGEKGKSAIEGVKVGGERNQVFIPLATALKKMQFK 232

Query: 227 P-NQAISGINLEPRVGSDRQALAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFL 285
           P    +  I    + G D    A +V+ +L R++    QD  IV+  D     +  QQ  
Sbjct: 233 PLEDELDTIKFALKEGIDPSLAAKSVEHLLSRRHGNE-QDYDIVVPADLLAQHQRTQQIF 291

Query: 286 LRLQSFLGIIGFITLAVASLGITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLI 345
                 +  +  I+L V  +GI N+M AT+   T +IG+  A+GAT   I   +L +S++
Sbjct: 292 ---NIVMACVAGISLLVGGIGIMNIMLATILERTSEIGLLRALGATQKDIARQFLIESMV 348

Query: 346 TMGMGGIAGLGVTFAMVRLLAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVA 405
               GG+ G+GV   +  +++A            G PV     ++++ ++V + V GI  
Sbjct: 349 ISATGGLIGIGVGLLLALVISAA----------AGWPVAWSVFAILLSLLVCMAV-GIGF 397

Query: 406 AWLPANHAAKVTPLQALQSE 425
              PA  AA++ P+ ALQ +
Sbjct: 398 GLYPAKKAARLDPIVALQRD 417