Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 650 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  105 bits (263), Expect = 3e-27
 Identities = 102/418 (24%), Positives = 174/418 (41%), Gaps = 34/418 (8%)

Query: 9   QEMAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHVSGGYATQT 68
           + + A   R +LT+L V      +  ++A+GEG +  ++  IQ+   NL+ V  G     
Sbjct: 266 RSLRANIFRTALTLLGVVIGVAAVVTMMAIGEGSKQDVLTRIQSMGTNLLLVRPG----A 321

Query: 69  HGRFHEGQALSLTEQDSQVLAALPMVKHALPSAEWQELITFADKRSWMMPYAVKSEYQAM 128
            G    G  +SLT  D++ +A L  +    P      +    +   +           A 
Sbjct: 322 PGIRPSGTDVSLTPTDAEAVAQLAGMAAVAPERMASGITVRREGIDYRTTINGTWPAYAA 381

Query: 129 NKLRLLPGGRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWFSGGELEQDPVGQIAKIG 188
            K   +  G +F+  D      V VLG  +A  LF  +E           DPVG    + 
Sbjct: 382 AKDWPMAWGSFFDATDLQASAPVAVLGQTVAKNLFPGEE-----------DPVGSYFLVR 430

Query: 189 AHEFTVIGVLAKNSGNIEQGSPIDYSGFTPFST-WQRFHPNQAISGINLEPRVGSDRQAL 247
              F VIGVL +  G    G   D     P +T + R    + +S +       +     
Sbjct: 431 NVPFLVIGVL-EAKGATPFGQDQDDIVLIPLTTAFARVSGGRYLSSLTARVEDATTIDES 489

Query: 248 AATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFLLRLQSFLGIIGFITLAVASLGI 307
            A ++ +L+ ++     D Q+   Q      +  Q  L  L   LG +  I+L V  +G+
Sbjct: 490 QAAIESLLQARHGKV--DFQVRNTQSLLEMVEKTQNSLTLL---LGAVALISLLVGGIGV 544

Query: 308 TNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITMGMGGIAGLGVTFAMVRLLAA 367
            N+M  +V   TR+IG+R+A GA  + I   +  +++   G+GG+AG+G+       +A 
Sbjct: 545 MNIMLVSVTERTREIGIRLATGARASDILLQFNTEAVAVCGVGGLAGVGLGLGAALAVAE 604

Query: 368 IPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPANHAAKVTPLQALQSE 425
               G P+    G P         ++      + G++  +LPA  AA++ P+ AL +E
Sbjct: 605 F---GLPVRFTPGPP---------IVAFCCAFLTGLLFGYLPARKAARLDPVVALSAE 650