Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 65.1 bits (157), Expect = 4e-15
 Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 53/261 (20%)

Query: 178 QDPVGQIAKIGAHEFTVIGVLAKNSGNIEQGSPIDYS-----GFTPFSTWQRFHPNQ--- 229
           +  +G++  I   +  VIGV+ K  G       ++YS      F  +S   R  P Q   
Sbjct: 176 ESAIGKLLYIDDEQLEVIGVVEKFQGAWVDSDELEYSVIHNVDFAGYSYMVRAEPGQHEA 235

Query: 230 ---AISGINLEP---RVGSDRQALAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQ 283
              AI+   ++    RV  D Q++A    +V KR Y            +DH L       
Sbjct: 236 LQDAITKALMKENPNRVIDDFQSVA----EVKKRSY------------RDHEL------- 272

Query: 284 FLLRLQSFLGIIGFITLAVASLGITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQS 343
               + + L ++  + L + SLG+T ++   ++R T+ IG R A+GAT   I   +L ++
Sbjct: 273 ----MITVLSMMVVLLLLITSLGLTGMVMFNIQRRTKQIGTRRALGATKGDILSLFLVEN 328

Query: 344 LITMGMGGIAGLGVTFAMVRLLAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGI 403
            +    GG+ G  +   + + L          YD     +P+L+L   ++ +V + ++  
Sbjct: 329 YLICLSGGVLGASLAVLLGQQLM-------KYYD-----LPQLNLLYPLMTVVGMMLVTT 376

Query: 404 VAAWLPANHAAKVTPLQALQS 424
           VA  LPA  AA ++P  A +S
Sbjct: 377 VAVVLPARKAANISPAMATRS 397