Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., ABC-type antimicrobial peptide transport system, permease component from Dechlorosoma suillum PS

 Score =  105 bits (263), Expect = 2e-27
 Identities = 98/419 (23%), Positives = 179/419 (42%), Gaps = 33/419 (7%)

Query: 11  MAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHVSGGYATQTHG 70
           M A +LR  LT+L +      +  +LA+G+G +  + ++I +   NL  V  G+      
Sbjct: 13  MGANRLRTFLTMLGMVIGVGAVVLMLAIGQGAQYAVAQSINSMGSNLFIVLSGFTNAGGV 72

Query: 71  RFHEGQALSLTEQDSQVLAALPMVKHALPSAEWQELITFADKRSWMMPYAVKSEYQAMNK 130
           R   G A +LT  D++ +  L  V+ A P  +    + +               Y  +  
Sbjct: 73  RSGSGNAPTLTVTDAEAITELDGVETAAPVHQGSAQLVYGSSNWNSYVIGTTPAYLDVRS 132

Query: 131 LRLLPGGRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWFSGGELEQDPVGQIAKIGAH 190
             L+ G   F   D     +V ++G   A  LF  +            +P G+  +IG  
Sbjct: 133 WALVDGSP-FTDSDLRASTRVALIGKTAAQNLFGAE------------NPTGKTLRIGQA 179

Query: 191 EFTVIGVLAKNSGNIEQGSPIDYSGFTPFSTWQRF---HPNQ-AISGINLEPRVGSDRQA 246
            F ++GVLA    +++ G   D     P +T QR     P Q ++  I ++        A
Sbjct: 180 PFLILGVLAPKGQSLD-GRDQDDVLIVPLTTAQRKLFGTPFQGSVRAIMVKAAAPEVMPA 238

Query: 247 LAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFLLRLQSFLGIIGFITLAVASLG 306
           +  ++  +L++++           V++      S  +    +   LG I  ++L V  +G
Sbjct: 239 VENSMNALLRQRHRIRPGQDDDFNVRNLTAVADSAAETTRIMSLLLGAIASVSLLVGGIG 298

Query: 307 ITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITMGMGGIAG--LGVTFAMVRL 364
           I N+M  +V   TR+IG+RMA+GA    I   +L ++++    G + G  LG+  A++  
Sbjct: 299 IMNIMLVSVTERTREIGIRMAIGAREKDILTQFLLEAIVISIAGCLIGLLLGIGGAVLTN 358

Query: 365 LAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPANHAAKVTPLQALQ 423
           L    L G  +          +S S +++       +GI   + PA  AA++ P++AL+
Sbjct: 359 L----LTGTAVI---------ISGSSVIVAFSVAAGVGIFFGYYPARKAARLDPIEALR 404