Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., ABC transporter permease from Methanococcus maripaludis JJ

 Score = 80.9 bits (198), Expect = 6e-20
 Identities = 99/425 (23%), Positives = 183/425 (43%), Gaps = 47/425 (11%)

Query: 9   QEMAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHVSGGYATQT 68
           + +  +K +  LTI+ +    L I  L+++G G+++ I   I     ++I V   Y +Q 
Sbjct: 12  RNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITV---YPSQQ 68

Query: 69  HGRFHEGQALSLTEQDSQVLAALPMVKHALPSAEWQELITFADKRSWMMPYAVKSE-YQA 127
                   + +  +QD + +  +  V   L        +T+ D+  +   +A KS  YQ 
Sbjct: 69  ITSI--AMSKNFNDQDLKAVEGVRGVDVVLYGWFGGTQVTYHDQEYYSSVFATKSSTYQI 126

Query: 128 MNKLRL---LPGGRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWFSGGELEQDPVGQI 184
                    L  GRW    D    +   V+GY LA   F+++              +G  
Sbjct: 127 FFTEAYGYELEKGRWMKDSD----KYTCVIGYSLAHDTFDREID------------IGDK 170

Query: 185 AKIGAHEFTVIGVLAKNSGNIEQGSPIDYSGFTPFSTWQR-FHPNQAISGINLEPRVGSD 243
            +I   ++ V+G+L +  GN +     D S   P+      F  +   +   ++ + G D
Sbjct: 171 IEINDKKYKVVGIL-EQIGNPDD----DNSIVIPYEAASEVFDVDDEYNMFMVKIKDGED 225

Query: 244 RQALAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFLLRLQSFLGIIGFITLAVA 303
              ++  ++  L+     S  D+   ++    L++     F +     +G+ G I+L V 
Sbjct: 226 VTKVSEDIEDELED----SRGDENFSVLTAEQLAESISSIFSVLTIFLVGVAG-ISLLVG 280

Query: 304 SLGITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITMGMGGIAG--LGVTFA- 360
           ++GI+N M  ++    +DIG+  A+GA  NTI   ++ ++      GGI G  LG+  A 
Sbjct: 281 AVGISNTMHMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIIGTILGILIAK 340

Query: 361 MVRLLAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPANHAAKVTPLQ 420
            +  +AAI           G     +S  +IV V+V   V+GI++ + PA   AK+ P+ 
Sbjct: 341 AIEYIAAI--------SGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVD 392

Query: 421 ALQSE 425
            L+ E
Sbjct: 393 TLRGE 397



 Score = 25.0 bits (53), Expect = 0.004
 Identities = 11/56 (19%), Positives = 26/56 (46%)

Query: 263 LQDQQIVMVQDHFLSQKSMQQFLLRLQSFLGIIGFITLAVASLGITNVMFATVKRA 318
           ++ + +V      ++QK  Q  L  +   +GI+  ++L     G+ N +   + +A
Sbjct: 1   MKPKDVVSFAGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKA 56